DFCI - Arabidopsis Gene Index

The Gene Index Project

DFCI Arabidopsis Gene Index

Arabidopsis_thaliana in Wikipedia
About AtGI Gene Index
Development and Goals	Background Information about AtGI
Release Summary	display a statistical summary of all AtGI releases
Category Comparison	display estimated number of genes among all plant releases
Sequence Similarity Search
BLAST	search TC sequences based on sequence similarity
Sequence Reports
Identifiers or Keywords	search TC reports using TC identifiers, GB accessions or keywords
TC Annotator	list all TC annotation
EST Annotator	list all EST annotation
Libraries	search EST libraries by keywords or tissue origins
CAT# Download	download EST and TC sequences originating from one library
Functional Annotation and Analysis
Alternative Splice Forms	prediction of alternative splice variants
EST Expression	compare EST expression between different libraries or tissues
Gene Ontology	classification of TCs by GO vocabularies
Metabolic Pathways	association of TCs with metabolic and signaling pathways
Oligomer Prediction	list all 70-mer oligo predictions

Release 13.0
(June 16, 2006)

Input Sequences
ESTs	619908
ETs	79223
Output Sequences
TC sequences	34155
singleton ESTs	39039
singleton ETs	8632
Total unique: 81826

Attributions

This Gene Index includes 5017 Ceres full-length cDNA sequences

A significant number of ESTs used to construct this index were generated by:

	The Institute for Genomic Research		Washington University School of Medicine, Genome Sequencing Center
	Cold Spring Harbor Laboratory		Kazusa DNA Research Institute
	Ceres, Inc

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Acknowledgements
	The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.