DFCI - Cotton Gene Index

The Gene Index Project

DFCI Cotton Gene Index

Gossypium in Wikipedia
About CGI Gene Index
Development and Goals	Background Information about CGI
Release Summary	display a statistical summary of all CGI releases
Category Comparison	display estimated number of genes among all plant releases
Sequence Similarity Search
BLAST	search TC sequences based on sequence similarity
Sequence Reports
Identifiers or Keywords	search TC reports using TC identifiers, GB accessions or keywords
TC Annotator	list all TC annotation
EST Annotator	list all EST annotation
Libraries	search EST libraries by keywords or tissue origins
CAT# Download	download EST and TC sequences originating from one library
Functional Annotation and Analysis
Alternative Splice Forms	prediction of alternative splice variants
EST Expression	compare EST expression between different libraries or tissues
Gene Ontology	classification of TCs by GO vocabularies
Metabolic Pathways	association of TCs with metabolic and signaling pathways
Oligomer Prediction	list all 70-mer oligo predictions

Release 10.0
(May 26, 2009)

Input Sequences
ESTs	341641
ETs	2322
Output Sequences
TC sequences	50069
singleton ESTs	66367
singleton ETs	80
Total unique: 116516

Attributions

A significant number of ESTs used to construct this index were generated by:

Clemson University Genomics Institute

Brookhaven National Laboratory

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Acknowledgements
	The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.