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DFCI Moss Gene Index

Physcomitrella_patens in Wikipedia

About PpspGI Gene Index
Development and Goals Background Information about PpspGI
Release Summary display a statistical summary of all PpspGI releases
Category Comparison display estimated number of genes among all plant releases

Sequence Similarity Search
BLAST search TC sequences based on sequence similarity

Sequence Reports
Identifiers or Keywords search TC reports using TC identifiers, GB accessions or keywords
TC Annotator list all TC annotation
EST Annotator list all EST annotation
Libraries search EST libraries by keywords or tissue origins
CAT# Download download EST and TC sequences originating from one library

Functional Annotation and Analysis
Alternative Splice Forms prediction of alternative splice variants
EST Expression compare EST expression between different libraries or tissues
Gene Ontology classification of TCs by GO vocabularies
Metabolic Pathways association of TCs with metabolic and signaling pathways
Oligomer Prediction list all 70-mer oligo predictions

Release 2.0
(May 26, 2009)

Input Sequences
ESTs 379272
ETs 36431

Output Sequences
TC sequences 30695
singleton ESTs 19787
singleton ETs 16670

Total unique: 67152

Attributions

A significant number of ESTs used to construct this index were generated by:

DOE Joint Genome Institute
National Institute of Genetics (Japan)

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Acknowledgements
   The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.