DFCI - N.benthamiana Gene Index

The Gene Index Project

DFCI N.benthamiana Gene Index

Nicotiana_benthamiana in Wikipedia
About NbGI Gene Index
Development and Goals	Background Information about NbGI
Release Summary	display a statistical summary of all NbGI releases
Category Comparison	display estimated number of genes among all plant releases
Sequence Similarity Search
BLAST	search TC sequences based on sequence similarity
Sequence Reports
Identifiers or Keywords	search TC reports using TC identifiers, GB accessions or keywords
TC Annotator	list all TC annotation
EST Annotator	list all EST annotation
Libraries	search EST libraries by keywords or tissue origins
CAT# Download	download EST and TC sequences originating from one library
Functional Annotation and Analysis
Alternative Splice Forms	prediction of alternative splice variants
EST Expression	compare EST expression between different libraries or tissues
Gene Ontology	classification of TCs by GO vocabularies
Metabolic Pathways	association of TCs with metabolic and signaling pathways

Release 3.0
(July 16, 2008)

Input Sequences
ESTs	41922
ETs	258
Output Sequences
TC sequences	5861
singleton ESTs	10160
singleton ETs	106
Total unique: 16127

Attributions

A significant number of ESTs used to construct this index were generated by: The Institute for Genomic Research

photo from The Botanical Garden of the University of Nijmegen

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Acknowledgements
	The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.