DFCI - N.crassa Gene Index

The Gene Index Project

DFCI N.crassa Gene Index

Neurospora_crassa in Wikipedia
About NcrGI Gene Index
Development and Goals	Background Information about NcrGI
Release Summary	display a statistical summary of all NcrGI releases
Category Comparison	display estimated number of genes among all fungi releases
Sequence Similarity Search
BLAST	search TC sequences based on sequence similarity
Sequence Reports
Identifiers or Keywords	search TC reports using TC identifiers, GB accessions or keywords
TC Annotator	list all TC annotation
EST Annotator	list all EST annotation
Libraries	search EST libraries by keywords or tissue origins
CAT# Download	download EST and TC sequences originating from one library
Functional Annotation and Analysis
Alternative Splice Forms	prediction of alternative splice variants
EST Expression	compare EST expression between different libraries or tissues
Gene Ontology	classification of TCs by GO vocabularies
Metabolic Pathways	association of TCs with metabolic and signaling pathways
Oligomer Prediction	list all 70-mer oligo predictions

Release 4.1
(July 10, 2008)

Input Sequences
ESTs	27246
ETs	28186
Output Sequences
TC sequences	10927
singleton ESTs	1477
singleton ETs	2092
Total unique: 14496

Attributions

Micrographs from Matt Springer Stanford University and the FGSC.

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Acknowledgements
	The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.