DFCI - Oilseed_rape Gene Index

The Gene Index Project

DFCI Oilseed_rape Gene Index

Brassica_napus in Wikipedia
About BnGI Gene Index
Development and Goals	Background Information about BnGI
Release Summary	display a statistical summary of all BnGI releases
Category Comparison	display estimated number of genes among all plant releases
Sequence Similarity Search
BLAST	search TC sequences based on sequence similarity
Sequence Reports
Identifiers or Keywords	search TC reports using TC identifiers, GB accessions or keywords
TC Annotator	list all TC annotation
EST Annotator	list all EST annotation
Libraries	search EST libraries by keywords or tissue origins
CAT# Download	download EST and TC sequences originating from one library
Functional Annotation and Analysis
Alternative Splice Forms	prediction of alternative splice variants
EST Expression	compare EST expression between different libraries or tissues
Gene Ontology	classification of TCs by GO vocabularies
Metabolic Pathways	association of TCs with metabolic and signaling pathways
Oligomer Prediction	list all 70-mer oligo predictions

Release 3.1
(May 31, 2008)

Input Sequences
ESTs	558465
ETs	2095
Output Sequences
TC sequences	47634
singleton ESTs	42634
singleton ETs	59
Total unique: 90327

Attributions

Significant number of ESTs were generated by Genoplante, 93, rue Henri Rochefort 91025 EVRY CEDEX France

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Acknowledgements
	The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.