DFCI - Bean Gene Index

The Gene Index Project

DFCI Bean Gene Index

Phaseolus_vulgaris in Wikipedia
About PhvGI Gene Index
Development and Goals	Background Information about PhvGI
Release Summary	display a statistical summary of all PhvGI releases
Category Comparison	display estimated number of genes among all plant releases
Sequence Similarity Search
BLAST	search TC sequences based on sequence similarity
Sequence Reports
Identifiers or Keywords	search TC reports using TC identifiers, GB accessions or keywords
TC Annotator	list all TC annotation
EST Annotator	list all EST annotation
Libraries	search EST libraries by keywords or tissue origins
CAT# Download	download EST and TC sequences originating from one library
Functional Annotation and Analysis
Alternative Splice Forms	prediction of alternative splice variants
EST Expression	compare EST expression between different libraries or tissues
Gene Ontology	classification of TCs by GO vocabularies
Metabolic Pathways	association of TCs with metabolic and signaling pathways

Release 3.0
(May 22, 2009)

Input Sequences
ESTs	83129
ETs	816
Output Sequences
TC sequences	11940
singleton ESTs	9415
singleton ETs	142
Total unique: 21497

Attributions

A significant number of ESTs used to construct this index were generated by:

	Universidad Nacional Autonama de Mexico
	The Advanced Genetic Analysis Center (AGAC), the University of Minnesota
	The International Center for Tropical Agriculture (CIAT)
	PHASEOMICS Global Initiative

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Acknowledgements
	The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.