DFCI - Petunia Gene Index

The Gene Index Project

DFCI Petunia Gene Index

Petunia_hybrida in Wikipedia
About PhGI Gene Index
Development and Goals	Background Information about PhGI
Release Summary	display a statistical summary of all PhGI releases
Category Comparison	display estimated number of genes among all plant releases
Sequence Similarity Search
BLAST	search TC sequences based on sequence similarity
Sequence Reports
Identifiers or Keywords	search TC reports using TC identifiers, GB accessions or keywords
TC Annotator	list all TC annotation
EST Annotator	list all EST annotation
Libraries	search EST libraries by keywords or tissue origins
CAT# Download	download EST and TC sequences originating from one library
Functional Annotation and Analysis
Alternative Splice Forms	prediction of alternative splice variants
EST Expression	compare EST expression between different libraries or tissues
Gene Ontology	classification of TCs by GO vocabularies
Metabolic Pathways	association of TCs with metabolic and signaling pathways
Oligomer Prediction	list all 70-mer oligo predictions

Release 2.0
(July 18, 2008)

Input Sequences
ESTs	13511
ETs	764
Output Sequences
TC sequences	2230
singleton ESTs	6457
singleton ETs	42
Total unique: 8729

Attributions

Significant number of ESTs were generated by David Clark (dclark@mail.ifas.ufl.edu), Environmental Horticulture Department, University of Florida

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Acknowledgements
	The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.