DFCI - Triphysaria Gene Index

The Gene Index Project

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DFCI Triphysaria Gene Index

Triphysaria_ in Wikipedia
About TriphGI Gene Index
Development and Goals	Background Information about TriphGI
Release Summary	display a statistical summary of all TriphGI releases
Category Comparison	display estimated number of genes among all plant releases
Sequence Similarity Search
BLAST	search TC sequences based on sequence similarity
Sequence Reports
Identifiers or Keywords	search TC reports using TC identifiers, GB accessions or keywords
TC Annotator	list all TC annotation
EST Annotator	list all EST annotation
Libraries	search EST libraries by keywords or tissue origins
CAT# Download	download EST and TC sequences originating from one library
Functional Annotation and Analysis
Alternative Splice Forms	prediction of alternative splice variants
EST Expression	compare EST expression between different libraries or tissues
Gene Ontology	classification of TCs by GO vocabularies
Metabolic Pathways	association of TCs with metabolic and signaling pathways

Release 1.0
(August 15, 2008)

Input Sequences
ESTs	107968
ETs	8
Output Sequences
TC sequences	17442
singleton ESTs	17043
singleton ETs	0
Total unique: 34485

Attributions

A significant number of ESTs used to construct this index were generated by:

	DOE Joint Genome Institute - Community Sequencing Project
	The Yoder Lab University of California- Davis

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Acknowledgements
	The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.