Bioconductor and R

Installation, Getting Started

Basic Introduction to R and Bioconductor. Includes information about installation and getting help. Download as pdf
Some recent bioconudctor papers

R Resources

An excellent beginners guide to R is from Emmanuel Paradis
Introduction to R classes and objects on R site
Tom Short's R reference card and other contributed are useful from the R the R contributed documentation
Stephen Eglen's publications in PLoS Computational Biology on A Quick Guide to Teaching R Programming to Computational Biology Students. It includes links to lecture notes and an overview of useful introductory books in R.
Simple Intro to Linear Models view
Ross Ihaka, one of the founders of R, gives tips and his vision for the furture of R in these Selected Papers and Talks

Courses

Introduction to microarray data analysis using R and Bioconductor
- Installing R and Bioconductor. Overview
- R Introductory Manual
- R code
- exercise
- Samples files: ToothGrowth (text file), csv file

Department of Biostatistics & Computational Biology, DFCI. April 20th 2008

HSPH wintersession course in R, January 2008

Bio503 Course Website

Course on Ordination, multivariate data analysis using made4. Link to Course Page

Course on feature selection using Bioconductor and R. Details on SAM, limma and Rank Product analysis. Link to Course Page

Bioconductor Resources

Bioconductor Courses
An excellent starter to Affymetrix data analysis Jean Wu's excellent lab on Affymetrix data analysis
Guide to importing GEO soft data files into bioconductor
Thomas Girke's (UC Riverside) intro into R and Bioconductor

Updated. 3rd May 2008. Aedin Culhane