Bioconductor and R

Installation, Getting Started

Basic Introduction to R and Bioconductor. Includes information about installation and getting help. Download as pdf
Some recent bioconudctor papers

R Resources

• An excellent beginners guide to R is from Emmanuel Paradis
• Introduction to R classes and objects on R site
• Tom Short's R reference card and other contributed are useful from the R the R contributed documentation
• Simple Intro to Linear Models view

Courses

• Introduction to microarray data analysis using R and Bioconductor, 9:45am-13:30am, April 30th 2008, Department of Biostatistics & Computational Biology, DFCI
  View slides from this talk.


• HSPH wintersession course in R, January 2008
  View Bio503 Course Website


• Course on Ordination, multivariate data analysis using made4. Link to Course Page
• Course on feature selection using Bioconductor and R. Details on SAM, limma and Rank Product analysis. Link to Course Page

Bioconductor Resources

• Bioconductor Courses
• An excellent starter to Affymetrix data analysis Jean Wu's excellent lab on Affymetrix data analysis
• Guide to importing GEO soft data files into bioconductor
• Thomas Girke's (UC Riverside) intro into R and Bioconductor