The latest updates from the Computational Biology and Functional Genomics Laboratory at Dana Farber Cancer Institute and the Harvard School of Public Health. This includes software updates and publications. en-us http://compbio.dfci.harvard.edu/ http://compbio.dfci.harvard.edu/pictures/mini-banner.gif http://compbio.dfci.harvard.edu/ 384 120 The Automated Microarray Processor v1.2 is released. Now you can perform GCRMA, MAS5.0/GCOS, and dChip normalizations in addition to RMA. Create quality control images for your data as well. http://compbio.dfci.harvard.edu/amp New features include an annotation file update, new file loaders, NonPaR, Charm, and many smaller improvements and bug-fixes. http://www.tm4.org http://compbio.dfci.harvard.edu/oracle_gift.html Now you can send us your comments and ask for help using our online helpdesk system. We look forward to hearing from you. http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/contact_us_zn.pl MeV v4.0 is now available for download. New features include Robust Analysis of MicroArrays (RAMA), Comparative Genomic Hybridization Viewer & Analyzer, Linear Expression Mapping (LEM), Tree-EASE (TEASE), Bayesian Robust Inference for Differential Gene Expression (BRIDGE), Uncorrelated Shrunken Centroids (USC) and many smaller improvements and bux-fixes. See the MeV page for downloads and more details. http://mev.tm4.org The New England Journal of Medicine has published Microarray Analysis and Tumor Classification, Quackenbush J. 2006 Jun 8;354(23):2463-72. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16760446&query_hl=7&itool=pubmed_docsum Nature Publishing Group has announced the publication of Milestones in Cancer, which brings together specially written articles focusing on ground-breaking discoveries in cancer research. http://www.nature.com/milestones/cancer The Computational Biology and Functional Genomics group is looking for two motivated people to assist us with our computing needs. Note: these positions have now been filled. http://compbio.dfci.harvard.edu/ John Quackenbush will present "Introduction to Analysis of DNA Microarray and Other Higher-Dimensional Datasets: A Hands-on Workshop" on Jan 18, 2005. http://compbio.dfci.harvard.edu/temp/Quackenbush_talk_1-18-06.pdf A new mailing list has been established for those involved in MultiExperimentViewer development. http://mev.tm4.org/mailman/listinfo/devel_mev.tm4.org The Gene Indices is a section of the Computational Biology and Functional Genomics Laboratory. http://compbio.dfci.harvard.edu/tgi/ We are offering a one-day course in the analysis of microarray expression data on June 13, 2005, 9:00am - 5:00pm. http://compbio.dfci.harvard.edu/class_announce.html MeSHer has been upgraded. New functions include Bonferroni Correction and recognition of Affymetrix IDs. http://compbio.dfci.harvard.edu/ Welcome to the rss feed for the new Computational Biology and Functional Genomics Laboratory at Dana Farber Cancer Institute and the Harvard School of Public Health. This site will host information about the group as well as announcements of new publications and new software updates. http://compbio.dfci.harvard.edu/