Tentative Ortholog 1107793
|
| Sequence1 | Sequence2 | % Identity | Match length | p-value | Recip. best hits |
| Lettuce|TC8457 | L.japonicus|TC16477 | 61 | 374 | 5.2e-14 | * |
| Medicago|TC109834 | L.japonicus|TC16477 | 82 | 337 | 3.7e-46 | * |
| Medicago|TC109834 | Lettuce|TC8457 | 63 | 319 | 1.4e-13 | * |
| Soybean|TC207893 | L.japonicus|TC16477 | 80 | 467 | 5.0e-60 | * |
| Soybean|TC207893 | Medicago|TC109834 | 82 | 357 | 2.3e-47 | * |
CLUSTAL W (1.81) multiple sequence alignment
ljest_TC16477 ------------------------------------------------------------ soybest_TC207893 ACCAGCCGCCTTGCCGCCTTTCCCACTGCCTGTGCCCTTGAAATGGTTCATGCAGCTTCA medicest_TC109834 ------------------------------------------------------------ lsest_TC8457 ------------------------------------------------------------ ljest_TC16477 ------------------------------------------------------------ soybest_TC207893 TTGATACACGATGATCTTCCCTGCATGGATGACTCCCCCTCACGCCGTGGTCAGCCTTCA medicest_TC109834 ------------------------------------------------------------ lsest_TC8457 ------------------------------------------------------------ ljest_TC16477 ------------------------------------------------------------ soybest_TC207893 AACCATACCATCTATGGTGTTGACATGGCAATTCTTGCGGGCGATGCACTCTTTCCCCTT medicest_TC109834 ------------------------------------------------------------ lsest_TC8457 ------------------------------------------------------------ ljest_TC16477 ------------------------------------------------------------ soybest_TC207893 GGATTTCGACACATTGTTTCACAAACTCCATCAGACCTTGTGCCTGAGTCGCACCTCCTT medicest_TC109834 ------------------------------------------------------------ lsest_TC8457 ------------------------------------------------------------ ljest_TC16477 ------------------------------------------------------------ soybest_TC207893 CGTGTGATTGCCGAGATAGCCCGCTCTGTAGGATCCACTGGAATGGCTGCAGGGCAGTTC medicest_TC109834 ------------------------------------------------------------ lsest_TC8457 ------------------------------------------------------------ ljest_TC16477 ------------------------------------------------------------ soybest_TC207893 CTGGACCTTGAAGGAGGACCCAATGCAGTTGGATTTATACAAGAAAAAAAGTTTGGTGAA medicest_TC109834 ------------------------------------------------------------ lsest_TC8457 ------------------------------------------------------------ ljest_TC16477 --------------------ATGTGGAGGATTGTTAGCTGGTGCTGAAGATGATGACATA soybest_TC207893 ATGGGGGAGTCTTCTGCAGTGTGTGGAGGATTCTTGGCTGGAGCTGAAGATGATGAGATA medicest_TC109834 ----------------------------------------------AAGATGATGAGATA lsest_TC8457 ---------------------------GGCCTCTGTGCGGGCGGTAATGATGATGAGATC ljest_TC16477 GAGAGACTGAGGAGGTACGGGAGAGCTGTTGGAGTATTGTATTCAGTTGTGGATGATATT soybest_TC207893 GAGAGACTGAGGAGGTATGGGAGAGCTGTTGGGGTATTGTATGCAGTTGTGGATGATATT medicest_TC109834 GAGAGACTGAGGAGGTATGGTAGAGCTGTTGGAGTATTGTATGCTATTGTAGATGATATT lsest_TC8457 CAACGGTTGAGAAGG-ACGGGCGGGCGGTGGGGATTTTGTATCAAGTAGTGGATGATGTT ljest_TC16477 TTGGAAGCGAGAGAGAATCCTGAGGGAGGTAATGACAGGAAAAACAAGGAGAAGAGTTAT soybest_TC207893 ATAGAAGAGAGATTGAAAGTTGAGGGAGATGGTGACAGGAAAAACAAGGGTAAGAGTTAT medicest_TC109834 TTGGAAGAGAGACTGAAACCTGAGGGAGATAAAGACAGGGAAAACAGCGGGAAGAGTTAT lsest_TC8457 TTGGAGGCGAAAATGAAA----GGGGAGGAGAAGACGGGGAA-----------GAGTTAT ljest_TC16477 GTAAAGGTTTATGGTGTCAAGAAAGCAACAGAGATGGCTGAAGAGCTTAGAGATAAAGCT soybest_TC207893 GCAGAGGTTTATGGAGTTGAAAAGGCAATAGAAAAAGCTGAAGAGCTCAGAGCAAAGGCT medicest_TC109834 GTAGAGGTTTATGGGGTTGAAAAAGCAGCAGAGGTAGCTGAAGAACTTAGAGCAAAGGCT lsest_TC8457 GTGGCGGTTTATGGTGTTGATAGGGCGGTGGAAGTGGCGGAGGAGTTGCGGGTGGAGGCT ljest_TC16477 AAGGAAGAATTGGATGGATTTGAGAAGTATGGGGAGCTAGTCTTTCCTCTCTACAGTTTT soybest_TC207893 AAAGAAGAATTGGATGGATTTGAGAAGCATGGGGAACGGGTCTTTCCTCTCTACAGTTTT medicest_TC109834 TTGGAGGAATTGGATGGATTTGAGAAGTATGGAGATCAAGTGTTGCCCCTCTACAGTTTT lsest_TC8457 AAGAGGGAGTTGGAGGGTTTTGAGAAGTATGGTGACAAGGTTTTACCGTTATATAGTTTT ljest_TC16477 GTGGATTATGCTTTTGATAGAAGTTTCAGTGTTGGTGAAGCTAGTGGGTGATGGGT---T soybest_TC207893 GTGGATTATGCTTTTGATAGAAGTTTCAGTGTTGATGATGCCAGTGGATAACGGGTGGTT medicest_TC109834 GTGAATTATGCTATTGATAGAAGTTTCAATGTTGACGAGGCCAGTAGATGATGGGT---T lsest_TC8457 GTAGATTATGCGGTTGATAGAGGGTTTAGTTTTGCT--TGATAAGGTTTCATTCTG---- ljest_TC16477 CCAGATTCTTAGTCATTCATGTTTCTTTTTTTGATT---TGAATCCTTGGGAGTCG---- soybest_TC207893 CTTGATATTTATATATTTATAGTTCTTTGATTGATCGACTGACTACTTGATAATCG---- medicest_TC109834 CTTGAAAGTCAACCACTTATAGTTCTT-GGTCGAGCAG-TGAGTTTGGCGAAATCATGGT lsest_TC8457 TTAAATTCTGTAATCTTTGTCATCTTTTAAATAAGGACTCTAGTTGTCTTATATAGTT-T ljest_TC16477 AATATTGT-ATTGCATAGAGAATAACTTATATAATTTAGAACAGGTAACTGCAGATCTAG soybest_TC207893 ATCATTGC-ATTGCATAGAGA---ACTTACACAGTTTAGAAAACGGTACTGCAATTCTAT medicest_TC109834 GGCGTCGTGATTTTGTTGATGCTTCAAAGTGTAGTTTTTGTCAAAATCGCGGCGTCCCAC lsest_TC8457 AGTTTTGT--TTGGAAAAGGAAATAAAAAAGTATTTTAGTCAAAACGAATGT-GTTGTAT ljest_TC16477 AGGGATGAGGATGAAGCATGGT---ACCTGAAGAGAAAAATGTCTACATAGTAATAGCAT soybest_TC207893 ACAATCAA--ATGAATCATCCTCA-GCATTTAGACTTTACCGTTCTTTTTGTGTTGG-AT medicest_TC109834 TCTGATTATGACAATTTCTGCGCAAATACAAACATGCACTTATTTGAGTCCTTATGAAAC lsest_TC8457 TTGGATTGCATTGTGATCTTTTTATTTTACTTAATGATAATATATGCATAAAAGCGGG-- ljest_TC16477 GTATCATAAAATGCCATTTATGA-----TTCCAAGTTAACATTCC--------------- soybest_TC207893 ATCTTGACCATTTACAGAGATGAGGAAGTTCTGAAGCATGGACCCATAAAAAAAGAGGCA medicest_TC109834 GATTATTGCATTTTAGAAACTTAGAGCTATAAAAAATATAATTGGGGTTAATTAAGAGAG lsest_TC8457 ------------------------------------------------------------ ljest_TC16477 ------------------------------------------------------------ soybest_TC207893 TATCTAATTAAATATTATGATTTTT----------------------------------- medicest_TC109834 TAAGGTCTGAACTGTTTTAGACTGTGAATCAATCTAAAGCGGTCCGATTCAAACAGTATT lsest_TC8457 ------------------------------------------------------------ ljest_TC16477 ------------------------------------------------------------ soybest_TC207893 ------------------------------------------------------------ medicest_TC109834 TAGAGGTGGGACAGTAATGGATACCAAAGAGGACTCGTCCTATGCTCTAGTCTTTACGAG lsest_TC8457 ------------------------------------------------------------ ljest_TC16477 ------------------------------------------------------------ soybest_TC207893 ------------------------------------------------------------ medicest_TC109834 AAGATAAGTTTTTATCTGTCTTATAAAAAGAGTAAGCTATTGCTGCTTTTTTTTTTCTCC lsest_TC8457 ------------------------------------------------------------ ljest_TC16477 ------------------------------------------------------------ soybest_TC207893 ------------------------------------------------------------ medicest_TC109834 TTTTTTTTAAGTTTTTATCTGTCTTTTAAAAAGACTAATTTTGAACCGCAAGTATTTTAA lsest_TC8457 ------------------------------------------------------------ ljest_TC16477 --------------------------- soybest_TC207893 --------------------------- medicest_TC109834 TATTTTGATCGGATGAGTTTTTGTCTC lsest_TC8457 ---------------------------Click button to view the alignment with Jalview
| Acknowledgements | |
|---|---|
 |
The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416. |
 
|