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DFCI Aquilegia Gene Index

Aquilegia in Wikipedia

About AqGI Gene Index
Development and Goals Background Information about AqGI
Release Summary display a statistical summary of all AqGI releases
Category Comparison display estimated number of genes among all plant releases

Sequence Similarity Search
BLAST search TC sequences based on sequence similarity

Sequence Reports
Identifiers or Keywords search TC reports using TC identifiers, GB accessions or keywords
TC Annotator list all TC annotation
EST Annotator list all EST annotation
Libraries search EST libraries by keywords or tissue origins
CAT# Download download EST and TC sequences originating from one library

Functional Annotation and Analysis
Alternative Splice Forms prediction of alternative splice variants
EST Expression compare EST expression between different libraries or tissues
Gene Ontology classification of TCs by GO vocabularies
Metabolic Pathways association of TCs with metabolic and signaling pathways
Oligomer Prediction list all 70-mer oligo predictions

Release 2.1
(June 6, 2008)

Input Sequences
ESTs 85039
ETs 239

Output Sequences
TC sequences 13556
singleton ESTs 7278
singleton ETs 111

Total unique: 20945

Attributions

Aquilegia formosa X pubescens cDNA library was constructed from mixed shoot and floral apical meristems, flower buds, leaves and roots provided by Scott Hodges, University of California, Santa Barbara. The ESTs were sequenced at The Institute for Genomic Research (TIGR).


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Acknowledgements
   The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.