DFCI - Grape Gene Index

The Gene Index Project

DFCI Grape Gene Index

Vitis_vinifera in Wikipedia
About VvGI Gene Index
Development and Goals	Background Information about VvGI
Release Summary	display a statistical summary of all VvGI releases
Category Comparison	display estimated number of genes among all plant releases
Sequence Similarity Search
BLAST	search TC sequences based on sequence similarity
Sequence Reports
Identifiers or Keywords	search TC reports using TC identifiers, GB accessions or keywords
TC Annotator	list all TC annotation
EST Annotator	list all EST annotation
Libraries	search EST libraries by keywords or tissue origins
CAT# Download	download EST and TC sequences originating from one library
Functional Annotation and Analysis
Alternative Splice Forms	prediction of alternative splice variants
EST Expression	compare EST expression between different libraries or tissues
Gene Ontology	classification of TCs by GO vocabularies
Metabolic Pathways	association of TCs with metabolic and signaling pathways
Oligomer Prediction	list all 70-mer oligo predictions

Release 6.0
(July 30, 2008)

Input Sequences
ESTs	347879
ETs	25497
Output Sequences
TC sequences	33638
singleton ESTs	30513
singleton ETs	14825
Total unique: 78976

Attributions

A significant number of ESTs used to construct this index were generated by:

Department of Biochemistry University of Nevada

CAES Genome Facility

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Acknowledgements
	The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.