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DFCI Potato Gene Index

Solanum_tuberosum in Wikipedia

About StGI Gene Index
Development and Goals Background Information about StGI
Release Summary display a statistical summary of all StGI releases
Category Comparison display estimated number of genes among all plant releases

Sequence Similarity Search
BLAST search TC sequences based on sequence similarity

Sequence Reports
Identifiers or Keywords search TC reports using TC identifiers, GB accessions or keywords
TC Annotator list all TC annotation
EST Annotator list all EST annotation
Libraries search EST libraries by keywords or tissue origins
CAT# Download download EST and TC sequences originating from one library

Functional Annotation and Analysis
Alternative Splice Forms prediction of alternative splice variants
EST Expression compare EST expression between different libraries or tissues
Gene Ontology classification of TCs by GO vocabularies
Metabolic Pathways association of TCs with metabolic and signaling pathways
Oligomer Prediction list all 70-mer oligo predictions

Release 12.0
(July 24, 2008)

Input Sequences
ESTs 231299
ETs 2819

Output Sequences
TC sequences 31567
singleton ESTs 29619
singleton ETs 186

Total unique: 61372

Attributions

cDNA libraries were constructed in the laboratories of Dr. Steve Tanksley, Cornell University http://www.sgn.cornell.edu (stolon, tuber, roots, leaves, eyes), Dr.William Fry, Cornell UniversityDepartment of Plant Pathology http://ppathw3.cals.cornell.edu/fry/index.htm (compatible P. infestans-challenged leaves), and Dr. Barbara Baker, University of California-Berkeley http://www.bakerlab.usda.gov (incompatible P. infestans-challenged leaves).

A significant number of ESTs used to construct this index were generated by: The Institute for Genomic Research


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Acknowledgements
   The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.