| The DFCI Arabidopsis thaliana Gene Index (AtGI) |
| AtGI TC Report: | |
| EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. | |
>TC280293 TC109400 TC127344 TC149385 TC172002 GTAAAATCATGTCCGTCCAATAAAACCCTAATTTTATCTTTCCTTGCGTCGTTTCACTCCATTACAGAGTTGTAGAATTT AGCTTGCCAAAAAGTGTGAAGATTAGGGTTTGTTCTAGATGTCCTACAATCAATCCAGACCCGACAGAAGCGAGACTCAA TATCGTAGAACTGGTCGATCCACCGGTAACCAACAACAACAACAACAACACCGATCTTCTTCCGCCGCCGGTTACGGTAA GGGCGCCGGCGCTCCTGGTTCTGCGCCTGCCCCTTCCACTTATCCTGATAATTCTTCCTTGTCTTCCAATCGCAGTTTTA AGAAGCCCGGCAATGCTCAAGGAGGAGGGCAGCCTCGGGTGAATCTGCCACCTGTGAATCATCCTAATAATCACAACAAT GGTCCCAATGCTCACTCTCGCTCTCAAGGAGAACCGGGTGTTGGTGGACCAACCAATCCAACTGAATCGTTCAACAGAAA CACCGGACCTATTCCAAAGGCTCCAACTTCTCAGTCTACCGTCATGAGTTCCAAGATCAATGAGACGCCCAACACAGCTA AAGTGGCAGCCTCTGGAGACGCTTCTCAGGCATTTCCTCTCCAGTTTGGGTCACTTGGTCCTGATTTGATGGTTCCTGCT CGAACTACCTCAGCACCTCCGAATATGGATGACCAGAAACGTGCCCAGATGCAGCAATCTTCTTTAAGAACGGCGTCAAA TGTGCCAGCTTCTGTACCCAAAAAAGATTCATCAAATAAGGGTGCAGATAATCAATTGATGAGGAAAGAGGGGCACAATC CATCGAGTGAAAAAGCTGATATCCAAGTCCCACATATAGCCCCTCCAAGTCAAACGCAGAAGTCTCCAATTACAAATATT CGCATGCCTTCTGTGCAGACACCATATCAGCATACTCAGGTCCCTCACCCTGTACATTTTGGTGGGCCGAATATGCATAT GCAGACTCCCGTGACTGCAACCTCGTTTCAGATGCCAATGCCAATGGCATTATCTATGGGAAATACTCCTCAAATCCCGC CGCAGGTGTTTTATCAGGGACATCCACCACATCCGATGCATCATCAGGGTATGATGCATCAGGCTCAGGGACATGGTTTT GCAACTCCAATGGGTGCTCAGATTCATCCTCAGTTAGGCCATGTGGGTGTGGGTTTGAGCCCTCAGTATCCCCAGCAGCA AGGTGGAAAATATGGTGGGGCACGCAAGACCACCCCTGTAAAGATTACACATCCTGACACACACGAAGAGCTGAGGCTTG ATCGACGTGGTGACCCGTATTCAGAAGGCGATTCAACGGCTTTAAAACCACATTCTAACCCACCTCCCAGATCACAGCCA GTCTCATCATTTGCTCCAAGACCAGTCAATTTGGTGCAACCCTCATATAACTCCAATACCATGATATATCCCCCGGTTTC GGTACCGTTAAATAATGGTCCAATGTCATCCGCTCAGGCACCGAGATATCATTACCCAGTTATTGATGGGTCTCAGAGAG TACAACTTATCAACCAACCTGCTCATACTGCTCCACAGCTTATCAGACCCGCTGCTCCTGCACATCTTTCCTCTGATTCG ACTTCCTCTGTGAAAGCACGCAATGCCCAAAATGTAATGTCATCTGCTCTACCTGTAAATGCGAAGGTATCAGTGAAGCC AGCTGGGGTTTCTGAAAAGCTTGGATCACCAAAAGACAGGTCACATGGAGAAGTTAACATTTCTCTGTCACAAAAGAACG TGGAGGCATGTTCGTTGAGCTCTTCCCAGCAGCCGAAACCTAGCTTTGTCTCTGGAGTACCAAATTCGTCTGCTCCGCCA GCAAAGTCGCCTGTGGAGACTGTTCCGCTAGCAAAGTCGTCTGTGGAGACTGTTCCGCCAGTAAAGTCGTCTGTGGAGAC TGCTCCAGTTACAACGACTGAAATCAGAAGAGCGGAAATGGTGAGTGAGTCGATCTCAGTTGAAGATCAGACATGTAAGG TGGAACCCCCTCATAATCTGACTGAGAATCGTGGACAGACTATGCCAGACTCTCTGGTCTCTGATCCTGAAACAGCAACC GTTGCTGCCAAGGAAAATTTATCACTCCCAGCTACCAACGGGTTTAGGAAGCAACTCCTGAAGGTGTCTACTACATCTGA TGCTCCAACTTCTGACTCAGTAGATACAAGTATTGACAAATCTACGGAAGGTTCAAGCCATGCCTCATCGGAGATTTCTG GTTCTTCACCGCAAGAGAAAGACCTAAAATGTGATAACCGGACTGCTTCTGACAAGCTCGATGAAAGGTCTGTAATTTCT GATGCAAAACACGAAACACTGTCAGGTGTGCTTGAGAAGGCACAGAATGAGGTAGATGGTGCCACAGATGTCTGTCCTGT CTCTGAAAAACTAGCTGTTACAGATGATACGAGCTCTGACCTTCCACATTCTACTCATGTTCTGTCTTCTACTGTTCCTC TTGGACATTCGGAAACACATAAATCTGCTGTTGAAACAAACACGAGAAGAAATACTTCTACAAAAGGAAAGAAGAAGATA AAAGAAATCCTTCAAAAAGCAGATGCTGCAGGGACAACTTCTGATCTCTATATGGCTTACAAAGGGCCTGAGGAAAAGAA AGAGAGCTCAAATGTTGTTCATGATGTTTCGAACCAGAACCTGTTACCTGCCATACCTCAGGCTGTTGAAGCCATTGTGG ATACTGAACCAGTGAAAAATGAACCAGAAGACTGGGAAGATGCAGCCGATGTTTCTACACCAAAGCTGGAAACTGCAGAT AATTCTGTGAATGCAAAGAGAGGTTCCTCAGATGAGGTCAGCGACAACTGCATCAATACAGAAAAGAAGTACTCCCGGGA TTTCCTCCTAAAGTTTGCAGACCTGTGTACTGCTCTTCCTGAGGGATTTGACGTTTCGCCTGATATTGCTAATGCCTTGA TTGTTGCATATATGGGTGCATCACATCATGAACATGATTCATATCCTACTCCTGGAAAGGTTATGGATCGCCAAGCAAGT GGTGCTCGTTTAGATCGCCGTCCCAGCAACGTGGCTGGTGATGATAGATGGACGAAGAATCAGGGTTCTCTTCCAGCAGG ATATGGGGGTAACGTAGGTTTCCGACCTGGTCAAGGAGGAAACTCGGGAGTTTTAAGAAACCCTCGTATGCAGGGACCAA TTATATCTAGACCGATGCAACCTGTGGGTCCTATGGGAGGAATGGGTAGAAATACCCCCGACTTAGAAAGGTGGCAACGT GGTTCAAATTTCCAACAAAAAGGACTTTTTCCTTCTCCGCACACTCCTATGCAAGTGATGCACAAAGCCGAGAGAAAATA CCAAGTGGGGACAATTGCAGATGAAGAACAAGCAAAACAAAGGCAGTTAAAGAGCATCCTGAACAAGTTGACCCCACAAA ACTTTGAGAAACTGTTTGAGCAAGTTAAAAGTGTCAACATTGACAACGCTGTTACACTTTCTGGTGTCATTTCACAGATA TTTGACAAAGCCTTGATGGAGCCAACATTCTGTGAGATGTATGCAGATTTCTGTTTTCATCTCTCTGGGGCGTTACCTGA TTTTAATGAGAATGGTGAAAAGATTACCTTCAAAAGATTGCTTCTCAATAAATGTCAGGAAGAATTCGAGAGGGGGGAGA AAGAAGAGGAGGAAGCCAGTAGAGTTGCCGAAGAAGGTCAAGTAGAACAAACCGAGGAGGAAAGGGAAGAGAAAAGACTT CAGGTGCGAAGGAGAATGCTTGGTAACATCAGACTTATTGGTGAGTTATACAAGAAAAGGATGTTGACTGAGAAAATCAT GCACGCATGCATCCAGAAGTTGCTCGGGTATAATCAAGATCCACATGAAGAGAATATTGAAGCTCTGTGTAAACTAATGA GTACGATAGGAGTTATGATCGATCACAACAAAGCTAAGTTCCAGATGGATGGATATTTTGAGAAAATGAAAATGCTATCA TGCAAACAAGAATTGTCTTCTAGGGTGAGGTTCATGTTGATCAATGCCATCGATCTGAGAAAGAACAAATGGCAGGAGAG AATGAAGGTCGAAGGGCCGAAAAAAATTGAGGAAGTGCACAGAGATGCTGCACAAGAACGCCAAACTCAAGCGAATAGGC TTTCACGTGGACCCTCAATGAATTCGTCAGGAAGAAGAGGGCATATGGAGTTTAGTAGTCCTAGGGGAGGAGGAGGAATG CTATCACCTCCAGCTGCCCAAATGGGTAGTTACCATGGACCACCTCAAGGTCGTGGCTTTAGTAATCAGGACATTCGATT TGATGACAGGCCATCTTATGAGCCTAGGATGGTTCCAATGCCGCAAAGGTCAGTATGTGAGGAGCCTATTACCTTGGGTC CGCAAGGTGGTCTTGGTCAGGGAATGTCTATTAGAAGGCCTGCAGTAGCATCAAACACTTATCAGTCTGATGCTACTCAG GCCGGTGGTGGAGATTCTAGGCGACCGGCCGGTGGTTTGAATGGTTTTGGCTCACATAGACCTGCAAGTCCTGTTACTCA CGGACGGTCAAGTCCTCAAGAGCGGGGAACAGCTTATGTTCATAGGGAATTTGCAAGTCTGTCGCGTGCTTCTGATCTGT CACCAGAAGTTTCGTCCGCTAGGCAAGTACTACAAGGGCCATCAGCTACAGTAAACAGTCCTCGAGAAAATGCTTTGTCT GAAGAACAGTTAGAGAATCTGTCATTGTCCGCAATTAAGGAATATTACAGTGCCCGAGATGAGAATGAGATTGGTATGTG CATGAAAGATATGAATTCACCAGCTTACCACCCAACAATGATTTCTCTCTGGGTAACTGATTCGTTTGAGAGAAAAGACA AAGAAAGGGATCTCTTAGCAAAGCTCCTTGTGAACCTCGTGAAATCTGCTGACAACGCCTTAAACGAAGTCCAGCTAGTG AAAGGGTTTGAATCGGTTTTGAAAACCCTGGAGGATGCAGTAAATGATGCTCCAAAAGCAGCAGAGTTTCTTGGTAGAAT ATTTGGGAAAAGTGTGACAGAGAAAGTAGTGACATTGACAGAGATTGGTCGGTTAATCCAGGAAGGAGGAGAAGAACCAG GAAGTCTGATAGAGTTTGGATTAGGCGGCGATGTTCTTGGGAGTGTTTTGGAGATGATAAAAACAGAAGCTGGAGAAGAA ACGTTGGTTGAGATTCGCCGGAGCTCAGGTCTGAGGATTGAAAATTTCAAACCTCATGCACCTAACCGGTCTAAGATATT AGAGAAATTTACTTAGGAAAAAAAAATGGAACCATCTTTTGGGTTCCTTTCTTCTTCTCTTTTTTTGTTTCTCTCTTAAA AGTCTTTTCTCTTTTCAAGTGCTTCAAACAAAACTAATTTGTTATAAAGGGAGTTTCTCTATTTTATTATATAGCAAAAA ACTTCCAAAATTTCTC
1=============================Open Reading Frames===========================5456 +1 ============================================================================ +2 == === == == === == === +3 ==== === == ===== = -3 ===== === == == -2 === == ==== -1 ============================================================================ ESTScan(+) ============================================================================ framefinder(+) ________________________________________________________________________________
1===================================TC280293================================54561>2>3>5>7>12> <194>8>13> <186>9>14> <2710>15>24>11a> <1611b> <17<20<2122> <23<25a<25b26> <28# Src EST Id GB# Clone/Protein left right Library/Protein name1 ETG NP858917 AB107249 BAC98352 1 5456 eukaryotic translation initiation factor 4G [Arabidopsis thaliana] 2 ETG NP281318 AF263518 AAF73054 1091 5296 protein synthesis initiation factor 4G; EIF4G 3 I02D 209n06.p1 CK119966 MPMGp2011N0620 1458 2229 AtM1 4 I006 AV546851 AV546851 RZL20f12F 2243 2872 Arabidopsis thaliana roots Columbia 5 I006 AV529283 AV529283 APZL32f12R 2553 2880 Arabidopsis thaliana aboveground organs two to six-week old 6 I006 AV528570 AV528570 APZL12f03R 2738 3118 Arabidopsis thaliana aboveground organs two to six-week old 7 I008 M72N02STM BE528740 600037907R1 3694 3959 Arabidopsis developing seed 8 I008 M74C04STM BE529348 600038610R1 3712 3967 Arabidopsis developing seed 9 I008 M64G17STM BE525996 600034568R1 3734 3983 Arabidopsis developing seed 10 I02A 95-E8975-008-017-M CB261562 MPIZp767M2417Q 3790 4349 MPIZ-ADIS-008 11a I008 M15G4TTM BE520927 M15G4 4044 4396 Arabidopsis developing seed 11b I008 M15G4STM BE520926 M15G4 4045 4345 Arabidopsis developing seed 12 I02A 37-E9409-012-002-J CB261448 MPIZp769J172Q 4101 4744 MPIZ-ADIS-012 13 I008 M36F5STM BE523412 M36F5 4393 4702 Arabidopsis developing seed 14 I006 AV527678 AV527678 APZ42d12R 4452 4904 Arabidopsis thaliana aboveground organs two to six-week old 15 I006 AV553638 AV553638 RZ68c07R 4491 4877 Arabidopsis thaliana roots Columbia 16 I006 AV545023 AV545023 RZ68c07F 4757 5416 Arabidopsis thaliana roots Columbia 17 I006 AV523582 AV523582 APZL32f12F 4781 5415 Arabidopsis thaliana aboveground organs two to six-week old 18 I006 AV548500 AV548500 RZL55f01F 4857 5446 Arabidopsis thaliana roots Columbia 19 I006 AV523003 AV523003 APZL12f03F 4941 5404 Arabidopsis thaliana aboveground organs two to six-week old 20 I006 AV533329 AV533329 FB059g08F 4946 5407 Arabidopsis thaliana flower buds Columbia 21 I006 AV546549 AV546549 RZL15g02F 4946 5430 Arabidopsis thaliana roots Columbia 22 I00E ATTS0403 Z17919 SASF002 4997 5297 Strasbourg-A 23 I006 AV521054 AV521054 APZ42d12F 5000 5413 Arabidopsis thaliana aboveground organs two to six-week old 24 ETG NP281319 AF263834 AAF73056 5014 5446 protein synthesis initiation factor 4G; EIF4G 25a I008 M18D3XP BE521246 M18D3 5025 5424 Arabidopsis developing seed 25b I008 M18D3XTM BE521247 M18D3 5066 5424 Arabidopsis developing seed 26 I024 BP823685 BP823685 RAFL22-07-D16 5035 5423 RAFL19 27 I024 BP782667 BP782667 RAFL07-83-B18 5075 5446 RAFL7 28 I006 AV538925 AV538925 RZ124d01F 5234 5446 Arabidopsis thaliana roots Columbia Sequence source codes: I00E Laboratoire de Biologie Moleculaire des Plantes CNRS, Gigot Claude / L512 I008 Michigan State University, Dept. of Biochemistry & Molecular Biology I006 Kazusa DNA Research Institute, The First Laboratory for Plant Gene Research I02D Max Planck lnstitute for Molecular Genetics, Plant Protein Chip Group, Department Lehrach I024 RIKEN Genomic Sciences Center, Plant Functional Genomics Research Group I02A Max Planck Institute for Plant Breeding Research, ADIS DNA core facility at MPIZ ETGB Expressed Transcripts from GenBank
TC sequence strand: coding strand
| Evidence for coding strand | Evidence for reverse complement | Inconclusive evidence | ||||
|---|---|---|---|---|---|---|
| ESTs | 5' ESTs | (used as +) | 11 | (used as -) | - | (5'/3' source not known) |
| 3' ESTs | (used as -) | 11 | (used as +) | 2 | ||
| total | 22 | 2 | 3 | |||
| Expressed transcripts | 3 | - | ||||
| Predicted genes | - | - | ||||
| Protein hits | 4 | - | ||||
| Trimmed polyA/T | - | - | ||||
Tentative Annotation:
UP|Q76E23_ARATH (Q76E23) Eukaryotic translation initiation factor 4G, complete 0
UP|Q76E23_ARATH (Q76E23) Eukaryotic translation initiation factor 4G, complete 0
GO annotation
| GO id | GO term | EC# | Type | GOpep link | %sim | %cov |
| GO:0003723 | RNA binding | - | M | TIGR_Ath1|At3g60240 | 100 | 99 |
| GO:0005554 | molecular function unknown | - | M | TIGR_Ath1|At3g60230 | 100 | 91 |
| GO:0006412 | protein biosynthesis | - | B | TIGR_Ath1|At3g60240 | 100 | 99 |
| Referenced by : |
| Tentative Ortholog Group 1030454 (general group) |
| Tentative Ortholog Group 1051549 (general group) |
| Tentative Ortholog Group 989461 (general group) |
|
| Genome | Chromosome | End5 | End3 | Score | Show genomic alignment with: | |||
|---|---|---|---|---|---|---|---|---|
| Arabidopsis genome | chr3 | 22,272,699 | 22,279,430 | 5416 |  |
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| Acknowledgements | |
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The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416. |
 
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