| The DFCI Arabidopsis thaliana Gene Index (AtGI) |
| AtGI TC Report: | |
| EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. | |
>TC308959 TC49039 TC53366 TC64499 TC75118 TC100247 TC127760 TC150055 TC184733 ATTTTCTCACCGTCGAGAGAACAAAACACAAGTTGCAGACTTTATCCAAATTTAGGGTTTTCTTTTTCTTCTTACTCAGA TTATCATCAGATCTTCGAAACCCCAAATTTACAAATCAGATCAGCTTCCCGGTTAGTACTACCCTCAAATCAACTAAGTT TCATGTCTGAACTTGACTCCCAGGTTCCCACTGCCTTTGATCCGTTTGCTGATGCGAATGTTGAGGACTCAGGTGCCGGA ACAAAAGAATACGTTCATATCCGTGTCCAGCAGCGAAATGGTAGGAAAAGCTTGACAACCGTCCAGGGCCTGAAGAAAGA GTACAGCTATACCAAGATACTTAAGGACCTCAAAAAAGAGTTTTGCTGCAACGGCACTGTGGTTCAGGATTCAGAACTCG GACAGGTTATACAGCTTCAAGGTGACCAACGTAAGAACGTCTCCACATTCCTTGTCCAGGCTGGTTTGGTGAAGAAGGAT AACATCAAGATCCATGGTTTCTAAGCTATCTAGTGGATCATATTATTAATAAAACCATATCTTTTTCTTTCATCTCTTGT TGCGAATTTCGGGTTTGATTCATCAAAATCGTCTTCTTCCTAGTGTTCTTCTTCTGTTTGGTATTCGAATTTTAATGGCT TATGTTCACCATACTTCTTCCCCTGTTTTCGTGTTACTCTGTTTCACATCTTACTTATCTTATAATATCAGTTTGTTAAG ATAAA
1=============================Open Reading Frames============================725
====================================== +1
+2
=================== +3
============ -3
-2
-1
====================================== ESTScan(+)
====================================== framefinder(+)
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1===================================TC308959=================================7251>65>2>3>4>5> <646>7>8>9>10a>61> .10b>11> <6212>13> <4414>15> <6316>17>18>19>20>21>22>23>24> <5825>26> <5927>28>29>30>31>32>33> <6034>35>36>37>38>39> <4041>42>43>45>46> <4748> <49<50<51<52<53<54<55<56<57# Src EST Id GB# Clone/Protein left right Library/Protein name1 I034 1104117 DR217311 249483 1 477 CERES-148 2 I034 65891 DR217315 31642 1 524 CERES-147 3 I034 129703 DR217317 97484 1 527 CERES-147 4 I034 954427 DR217326 151170 1 467 CERES-148 5 I034 168832 DR217327 148891 1 444 CERES-148 6 I034 160106 DR217334 142705 1 477 CERES-148 7 I034 111197 DR217340 91890 1 546 CERES-147 8 I034 1141993 DR217319 263368 2 488 CERES-147 9 I034 960669 DR217320 158520 2 494 CERES-148 10a I034 73450 DR217324 39319 2 400 CERES-148 10b I034 146881 DR376421 39319 11 725 CERES-148 11 I034 1082004 DR217330 232364 2 342 CERES-148 12 I034 4519150 DR217323 1024981 9 470 CERES-149 13 I034 1147295 DR217329 268670 9 125 CERES-147 14 I034 152475 DR217335 119515 9 462 CERES-149 15 I034 43801 DR217314 9071 12 412 CERES-147 16 I034 158883 DR217322 126577 12 471 CERES-148 17 I034 151076 DR217328 118089 12 516 CERES-148 18 I034 960728 DR217336 158579 12 521 CERES-148 19 I034 155447 DR217338 122575 12 406 CERES-148 20 I024 BP823889 BP823889 RAFL22-07-N19 13 405 RAFL19 21 I024 BP842248 BP842248 RAFL21-54-C10 13 392 RAFL21 22 I024 BP863379 BP863379 RAFL21-66-H17 13 409 RAFL21 23 I034 57639 DR217337 23212 15 436 CERES-147 24 I008 119 T04169 2A8T7P 20 331 Lambda-PRL2 25 I008 33755 AA728701 K5A1TP 21 424 CD4-6 26 I008 33771 AA728717 K6A1TP 21 329 CD4-6 27 I034 58765 DR217309 24365 26 458 CERES-147 28 I006 AV554105 AV554105 RZ81b01R 28 540 Arabidopsis thaliana roots Columbia 29 I034 115060 DR217313 95182 28 502 CERES-147 30 I034 1140673 DR217331 262048 28 519 CERES-147 31 I034 44314 DR217339 9592 28 527 CERES-147 32 I034 4523912 DR217310 1029011 30 483 CERES-149 33 I034 1146897 DR217318 268272 30 321 CERES-147 34 I034 151139 DR217325 118153 30 504 CERES-148 35 I034 49734 DR217332 15110 30 478 CERES-149 36 I02A 63-E018429-019-008 CB254660 MPIZp768N158Q 50 621 MPIZ-ADIS-019 37 I006 AV552875 AV552875 RZ47f08R 74 339 Arabidopsis thaliana roots Columbia 38 I034 12844731 DR217312 1367511 74 415 CERES-AN65 39 I034 1106431 DR217333 251797 74 593 CERES-147 40 I006 AV544550 AV544550 RZ47f08F 81 691 Arabidopsis thaliana roots Columbia 41 I02A 82-E018440-019-009 CB253952 MPIZp768D229Q 81 599 MPIZ-ADIS-019 42 I02A 48-E012740-027-002 CB257046 MPIZp772P122Q 81 653 MPIZ-ADIS-027 43 I034 129706 DR217316 97487 83 570 CERES-147 44 I006 AV522344 AV522344 APZ77e11F 145 722 Arabidopsis thaliana aboveground organs two to six-week old 45 ETG NP231840 AB005232 BAB08755 163 504 protein translation factor Sui1 homolog 46 ETG NP646168 BT005836 AAO64771 163 504 At5g54760 [Arabidopsis thaliana] 47 I006 AV562201 AV562201 SQ165g10F 196 722 Arabidopsis thaliana green siliques Columbia 48 I034 12823674 DR217321 1359436 219 722 CERES-AN65 49 I002 701552423 AI997154 701552423 227 683 A. thaliana, Columbia Col-0, root-2 50 I024 BP578328 BP578328 RAFL14-17-J22 236 717 RAFL14 51 I006 AV564318 AV564318 SQ202e12F 250 709 Arabidopsis thaliana green siliques Columbia 52 I024 BP581541 BP581541 RAFL14-32-F23 258 717 RAFL14 53 I024 BP576117 BP576117 RAFL14-15-J10 259 717 RAFL14 54 I024 BP583054 BP583054 RAFL14-39-F08 273 717 RAFL14 55 I024 BP634831 BP634831 RAFL17-36-B04 286 661 RAFL17 56 I024 BP671389 BP671389 RAFL21-39-K12 321 722 RAFL21 57 I02B 01L18 CD529119 323 722 Arabidopsis Leaf Senescence Library 58 I024 BP654132 BP654132 RAFL19-16-H15 359 717 RAFL19 59 I006 AV545363 AV545363 RZ81b01F 360 722 Arabidopsis thaliana roots Columbia 60 I006 AV557954 AV557954 SQ085c01F 360 707 Arabidopsis thaliana green siliques Columbia 61 I006 AV549113 AV549113 RZ03e05R 422 722 Arabidopsis thaliana roots Columbia 62 I024 BP582767 BP582767 RAFL14-37-P05 452 717 RAFL14 63 I024 AU226938 AU226938 RAFL14-68-A02 460 714 RAFL14 64 I006 AV558445 AV558445 SQ098g11F 484 722 Arabidopsis thaliana green siliques Columbia 65 I024 BP810750 BP810750 RAFL24-27-F15 575 722 RAFL16 Sequence source codes: I006 Kazusa DNA Research Institute, The First Laboratory for Plant Gene Research I02A Max Planck Institute for Plant Breeding Research, ADIS DNA core facility at MPIZ I002 Genome Systems Inc. a wholly owned subsidiary of Incyte Pharmaceuticals Inc., I008 Michigan State University, Dept. of Biochemistry & Molecular Biology I034 Ceres Inc, I02B Cornell University, Department of Horticulture I024 RIKEN Genomic Sciences Center, Plant Functional Genomics Research Group ETGB Expressed Transcripts from GenBank
TC sequence strand: coding strand
| Evidence for coding strand | Evidence for reverse complement | Inconclusive evidence | ||||
|---|---|---|---|---|---|---|
| ESTs | 5' ESTs | (used as +) | 39 | (used as -) | - | (5'/3' source not known) |
| 3' ESTs | (used as -) | 17 | (used as +) | 1 | ||
| total | 56 | 1 | 7 | |||
| Expressed transcripts | 1 | - | ||||
| Predicted genes | 1 | - | ||||
| Protein hits | 3 | - | ||||
| Trimmed polyA/T | 2 | - | ||||
Tentative Annotation:
UP|Q9FFV1_ARATH (Q9FFV1) Protein translation factor Sui1 homolog (At5g54760), complete 0
UP|Q9FFV1_ARATH (Q9FFV1) Protein translation factor Sui1 homolog (At5g54760), complete 0
Clone links to other TCs:
| EST | Orientation | Linked EST | Linked EST Orientation | Linked TC # |
| DR376421 | 3' | DR301512 | 5' | TC302551 |
| DR217324 | 5' | DR301512 | 5' | TC302551 |
GO annotation
| GO id | GO term | EC# | Type | GOpep link | %sim | %cov |
| GO:0003743 | translation initiation factor activity | - | M | GeneDB_Spombe|SPBC23G7.05 | 80 | 75 |
| GO:0005840 | ribosome | - | C | GeneDB_Spombe|SPBC23G7.05 | 80 | 75 |
| GO:0008372 | cellular component unknown | - | C | TAIR|gene:1005027740 | 88 | 79 |
| GO:0006413 | translational initiation | - | B | GeneDB_Spombe|SPBC23G7.05 | 80 | 75 |
| Genome | Chromosome | End5 | End3 | Score | Show genomic alignment with: | |||
|---|---|---|---|---|---|---|---|---|
| Arabidopsis genome | chr5 | 22,261,093 | 22,262,964 | 681 |  |
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| Acknowledgements | |
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The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416. |
 
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