The DFCI Arabidopsis thaliana Gene Index (AtGI)
AtGI TC Report:
EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. 

>TC289551 TC63471 TC80144 TC96846 TC128799 TC163454 TC185492 TC216390 TC247448 TC276253
AAACCCCAAAGTCTCTAGCTTGAAACTGAGATTTTCGAAGAATTCATCAAAATGTGGAGAGAATCGGCTTCGTTTATCCT
CGATAAGCATCAGAACAACAAACCCATTTCTCTAACTCATTCAATTGATTCTCCTCCACCACCATCTGCTTCAATGGCGG
ATGAAAACCCTAACCCTAATCCTATTTCGGCTTATTACCAAACCAGAGCGGCGCATCATGGAATTGTGACTAGCGAGTGG
TTGGAGCAGGCTCAAGCCGCGGTTCGACGTTACCCTGATCGTGATTCCTTAGTTTCGGGAAGACCCTTTAGCGTGATTGA
GGACTTTAATAGTTGGAGACAGCAACCTGATTTGGCGGAGGCTGTTGCGGCGATTCGTGCTCTTGCGGCTGTTATTAGGG
CTAGTGAAGCTACTACTATGATGGAACTTGAAATTGAACTCAAGAAAGCTTCTGATACTCTGAAATCATGGGACACAACG
TCGATATCCTTAACAGCGGGATGTGATCTATTCATGCGCTATGTGACTCGAACATCTGCTTTAGAATTTGAGGACTTCAA
CTCTGCGAAATCCCGTGTGCTTGAACGTGCTGAGAAATTTGGGGAAATATCTTGCAAGGCCCGAACGATAATTGCAATGC
TTAGTCAAGATTTCATATTTGATGGGTGTACTATTCTGGTCCATGGTTTCTCCAGAGTTGTGTTTGAAATACTAAAGACA
TCAGCGCAAAACAAGAAACTCTTTCGAGTGTTGTGCACAGAGGGAAGGCCAGATAAAACAGGTGTACTGCTAGCTAACGA
GCTTGCAAAACTTGATATTCCTGTGAAGCTTCTGATCGATTCAGCCGTGGCCTATAGCATGGATGAAGTAGACATGGTGT
TTGTTGGAGCTGATGGAGTAGTTGAAAAGTGGCGGGATAATTAACATGATGGGAACTTACCAAATCGCCCTAGTCGCACA
GAGTATGAATAAACCAGTCTATGTAGCTGCAGAGAGTTACAAGTTTGCACGGCTCTACCCGTTGGATCAAAAGGACTTAG
AACCAGCCTTGCGACCTATTGATTTCAGTGTTCCTGTTCCTCCTAAGGTTGAGGTAGAAAGATCTGCAAGGGACTACACT
CCTCCTCAGTACTTGACTCTACTCTTCACTGATCTTGGTGTTCTCACTCCATCTGTAGTAAGTGACGAGCTTATTCAGCT
TTACTTGTAAGTGAAGCTGTCTAATTCCTATAGCTGGTCTGAAATCTCTCATTTTTTGTATAAAAATAAAAACAAAAACA
CCATATTTTTGGCTATACACAGACATAGTTTGTCTCTGATTCTTACTGCTAATGCACATTTTTTTTGGTAGTAGCGAGAT
CTTTGTGACTTGTCATCTTTACTCAAAATTTATCACCCAAGTTTCAATATATAGTTACTAGTATAT
1=============================Open Reading Frames===========================1426

    =================================================                             +1
 ======                                            ================               +2
                                                                                  +3
                ==============                                                    -3
                               ========                                           -2
                                                                 ===========      -1
 =====================================================================            ESTScan(+)
                                                                                  
    =================================================================             framefinder(+)
________________________________________________________________________________

1===================================TC289551================================1426
                      1                      >              13          >
            2            >                   10         >
               3              >                <              11               
            4            >                      <             12              
             5            >                       <             14              
                 6             >                  <             15             
                                     7                             >
                                     8                             >
                                         9             >
                                                   <          16           
                                                     <          17          
                                                     <          18          

                                                                                                                                                             
 #  Src  EST Id              GB#           Clone/Protein   left  right Library/Protein name
                                                                                                                                                             
 1  I02F BX838750            BX838750      GSLTFB37ZF08        1   824 Arabidopsis thaliana Flowers and buds Col-0
 2  I034 5742115             DR262097      1149406             5   472 CERES-AL46
 3  I02F BX838646            BX838646      GSLTFB94ZH07       18   560 Arabidopsis thaliana Flowers and buds Col-0
 4  I006 AV558224            AV558224      SQ092f01F          20   469 Arabidopsis thaliana green siliques Columbia
 5  I034 5790911             DR262096      1162090            29   473 CERES-AL45
 6  I006 AV551542            AV551542      RZ128b02R          66   577 Arabidopsis thaliana roots Columbia
 7  ETG  NP183936            AC009324      AAF02860          154  1210 Similar to initiation factor 2 subunit
 8  ETG  NP183938            AC009324      AAF02861          154  1210 Similar to initiation factor 2 subunit
 9  I006 AV526793            AV526793      APZ21f07R         497  1003 Arabidopsis thaliana aboveground organs two to six-week old
10  I008 8142                T44879        126G4T7           662  1012 Lambda-PRL2
11  I002 701552463           AI997166      701552463         832  1403 A. thaliana, Columbia Col-0, root-2
12  I006 AV530608            AV530608      FB006b04F         853  1384 Arabidopsis thaliana flower buds Columbia
13  I02A 02-E010741-019-001  CB253429      MPIZp768D011Q     888  1309 MPIZ-ADIS-019
14  I006 AV543600            AV543600      RZ203d07F         889  1426 Arabidopsis thaliana roots Columbia
15  I006 AV543608            AV543608      RZ203e06F         898  1415 Arabidopsis thaliana roots Columbia
16  I006 AV520470            AV520470      APZ21f07F         916  1339 Arabidopsis thaliana aboveground organs two to six-week old
17  I006 AV555349            AV555349      SQ012c02F         940  1349 Arabidopsis thaliana green siliques Columbia
18  I006 AV539145            AV539145      RZ128b02F         947  1350 Arabidopsis thaliana roots Columbia



Sequence source codes:

I002 Genome Systems  Inc.  a wholly owned subsidiary of Incyte Pharmaceuticals  Inc.,  
I008 Michigan State University, Dept. of Biochemistry & Molecular Biology
I02F Genoscope   Centre National de Sequencage,  
I006 Kazusa DNA Research Institute, The First Laboratory for Plant Gene Research
I034 Ceres  Inc, 
I02A Max Planck Institute for Plant Breeding Research, ADIS DNA core facility at MPIZ
ETGB Expressed Transcripts from GenBank

TC sequence strand: coding strand

Evidence for coding strandEvidence for reverse complement Inconclusive evidence
ESTs5' ESTs (used as +) 4 (used as -) - (5'/3' source not known)
3' ESTs (used as -) 6 (used as +) 1
total10 1 5
Expressed transcripts- -  
Predicted genes2 -
Protein hits4 -
Trimmed polyA/T- -

Tentative Annotation:
UP|Q3ECQ8_ARATH (Q3ECQ8) Protein At1g53880 (Protein At1g53900), partial (68%) 0

GO annotation

GO idGO termEC#TypeGOpep link%sim%cov
GO:0003743translation initiation factor activity-MTIGR_Ath1|At1g72340 9687
GO:0005525GTP binding-MTIGR_Ath1|At1g72340 9687
GO:0005851eukaryotic translation initiation factor 2B complex-CTIGR_Ath1|At1g72340 9687
GO:0006413translational initiation-BTIGR_Ath1|At1g72340 9687

Referenced by :
Tentative Ortholog Group 1029860 (general group)
Tentative Ortholog Group 1038897 (general group)
Tentative Ortholog Group 970649 (general group)
Tentative Ortholog Group 975811 (general group)
Maps to :
GenomeChromosomeEnd5End3ScoreShow genomic alignment with:
Arabidopsis genome chr1 20,132,143 20,134,718 1404    
Arabidopsis genome chr1 20,119,578 20,122,153 1404    

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Acknowledgements
   The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.