| The DFCI Arabidopsis thaliana Gene Index (AtGI) |
| AtGI TC Report: | |
| EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. | |
>TC291965 TC64440 TC80896 TC99942 TC131389 TC169662 TC191374 TC246741 TC275685 ATTTTAACCTAAAAGTATAAATTCTCCTTACTCAAGCTTTCTTCTTCGATCGAAATTTATAAATACGACGCGACAAACCT GAATTGCGTTCAGAAACCCTAAAGCTCTCAAATATATCTCTGCAACGAAAAGAAATCACCTGCTTACTCTTCTCCTGAAA GACCTGATCTTCTCCGGTGAATTGTTTTTTGTTCCGTCAATCTTCCGAGTTTGTTTTTGCCTAATATGAAGTTAAACCCA TTACAGAAAAAGGCTATATTCATATTTGATTTCTATCAATGGATCCGAGGAATTCGAGTGCGTGGGGTGGGGGTGATGGT CTCCCCCTTATCTCATCCATGGGAGGTGTTGAATCAAAGAATAGATGCTGTGTGACTGACGACGATGGCTCTATTGGTAC GAAGCTATGTGAGAAACCTAAAGCTGAGGAGATTGATTTTTCTGCTCGGAAAAAGAAGTTGAAATCGAAGAAAGGCGGGT CTGTTAGCTTTGCTCTTCTCGATGTTGAAGATGACAAGGAGGAAGCAGAGGATGGAGACGACAAAAATCCTTCTATTAGG AGTGATGAGGTGGTTGGAGAAACTTCAATGAGTAAGAAAAAGAAGAAGGATAAGAGTGGCAAGCATGGGGTATGTGAAGA AGATGATGATGCGGACAAGATTCTTGCTCAACATGGGATAACAACTACTGTTTCAACAGGGCCTGAAGCGGAGATAGCTC TAGCTCAACCTGAGCAAGTTGCATCTGCAGATGGGGCTGTTGACAAGGACGGAGAAGAAAAGACTGTTGAGTCAGCTACA GCGAAGAAAAAGAAAAAGAAGAAGGACAAGGACAAGAAAGCAAGTGCTTCTTTAGCTATTTCTTCTGTGGAGGCTAAGGA GGATAGACAAGGGAAGAAAGATGTAAAGATTAAAGTAGCGGAAAAGAAAGTTCCTAAACATGTTCGAGAGAAGCAAGAGA CTCTTGCGCGGTGGAAAGAAGCTGAAGATGGGAAGAAGAAGGAAGAAGAAGAGAGATTGAGGAAAGAGGAAGAGGAGCGC CGTATAGAGGAAGAGCGAGAAAGGGAAGCTGAAGAGATTAGGCAGAAGAGAAAGATCAGGAAAATGGAGAAGAAGCAAGA AGGCCTGATTCTAACAGCAAAGCAAAAGCGTGATGCTGCTAAGAATGAGGCTTTCAGAAAAAGGGTGTTGACTGATGCTG GAAGTCTTCTTGTTGCAGATAAAAACGGTGATTCCTCAAAACGTCCCATATATGGCAATAAAAACAAATTAGCTTGCAAA AAAGCAAACGATCCTGCTTCTGTCCAGGCTAAAGGTGATGGGGAAACCAAGGAAAATCATGCAGCAGATGAACCATGTAC TTTACCTGACTTGGTTTCAGTTGAAGATAGAAGGGTTGGTATTATCGAATCAGTAGACACAGAAGAGACACATGAATCTG TTGATGTATCACAAGAGAATGGTGATGAGGAAGATGTGTGGGATGCAAAAACTAATTTTACCATCAAGGGTGATTCTGAT GATGAGGAGGAAAAACCTCAGCCTGTGTTCAAGAAAGGTTTAAAAGACACTGCATCAAAGGCACATGATTCAGTTCCTGG CGCAGATAGACCAACAGTGAAGCCTGGAGGTTCTGGCAAGCCAAAAACAGCTGCCAAAAAAGCTATGCCTAAGGTGGATG ATACTACCCGGCCGAAAGATACTTCTAAAAAGGATGAAGGCTTAGTACTGAATGAACTTGCTAAAGAAGTAGAAGAAAAT CTTCGCTCTCCAATTTGCTGCATCATGGGTCATGTTGATTCTGGTAAAACAAAGCTGTTGGATTGCATCAGAGGAACAAA TGTTCAGGAAGGTGAAGCTGGAGGTATTACTCAACAGATTGGTGCAACCTTTTTCCCTGCAGAAAACATCCGTGAGAGGA CCAAAGAGTTACAAGCTAATGCTAAACTCAAGGTGCCAGGTATATTGGTTATCGATACACCTGGACACGAGTCATTCACA AATCTGCGGTCAAGGGGTTCAAATTTGTGTGACCTTGCAATTCTAGTGGTTGATATAATGCGAGGTCTAGAGCCACAAAC CATAGAATCTCTTAATCTTTTGAGAAGAAGGAATGTAAAGTTCATTATTGCCTTGAATAAGGTGGATAGGCTATATGGGT GGGAAAAAAGCAAGAATGCTCCTATAAGGAAGACAATGATGCAACAAACGGGAGATGTGGTTAAGGAATTTAAAATGAGG CTAAACCGAGTTCAAAACCAGTTCCAAGAACAAGGACTCAACAGTATGCTTTATTACAAGAACAGAGAAATGGGAGAAAC TATCAGTATCCTACCTGCTAGCGCTATTAGTGGGGAAGGGATTCCAGATCTTTTACTGTTCTTGGTTCAATGGGCTCAGA AAACGATGGTGGAGAAACTTACATATGTTGACAAAGTGCAGTGTACCGTCCTTGAGGTCAAAGTTATTGAAGGCCATGGT ATTACAGTTGATGTTGTTTTGGTCAACGGTGTACTCCGTGAAGGTGATCAAATTGTTGTTTGTGGGTCACAGGGACCAAT TGTAACAACTATTAGATCATTGTTGACTCCTTATCCTATGAACGAGATGCGGGTGACGGGTACCTATATGCCTCACAGAG AAGTAAAGGCTGCGCAGGGTATCAAAATTGCTGCACAGGGCCTTGAACACGCCATTGCTGGTACTGCCTTGCATGTGATT GGACCTAATGAGGACATGGAAGAAGCCAAGAAAAATGCCATGGAAGATATTGAGTCAGTTATGAACCGCATTGACAAAAG TGGTGAAGGCGTTTATGTACAAGCATCTACATTAGGGTCCTTGGAAGCATTGCTCGAGTTCTTGAAGTCCTCAGATGTAA AAATACCTGTCAGTGGTATTGGCATAGGACCTGTGCATAAGAAGGATATCATGAAGGCCGGGGTAATGCTAGAGAAGAAA AAAGAGTTTGCAACGATTTTGGCCTTTGATGTGAAAATAAGTGCAGAAGCTCGTGAACTTGCAGACAAAATGGGAGTAAA AATCTTCTGCGATGATACCATCTATTGTCTGTTCGATAAGTTTAAGAGTTACATAGAGGGTATCAAAGAGGAGAAAAAGA AAGAAACAGCTTGTGAAGCAGTTTTCCCATGTATCCTTCAGATTTTACCAAACCATATCTACAATCAGAGGGACCCAATT ATCCTTGGAGTTAAAGTCAATGATGGAATACTAAAGGTTGGAACTCCCATTTGCATTGTTAAAAGGATTGAGAATGTAAG AGTGTTTATGGACATTGGGCGCGTCTCATCAATTAAGAATAACAACAACATGCCAGTTGATTATGCAAGGAAAGGACAGG AGGTGGCTATTAAGATCATTGCTTCTAACCCAGAAGAACAGAAAATGTTTGGGAGGCACTTTGGTGTAGACGACAGGCTT ATCAGTCACATTTCTAGTCGATCCGTGGACGTAATCAGAACTAATTACTGGAGAAATAAAGGACCTATTCACAGATTCAG ACAACATCGTCGCATTTTGATTTTGAATCGATTATTTTACCTACACTCGTGTATGAGCCAGTCCTCCGGAATAAGACAAC ATCTCCAGGAGTCTCTACGAAATTCTTCGGCTCTCAAAGGTATTCACGACGGTCTTTTAGCTCTATTCTCTATTGAGAAC CTGATTTTTCCGGTGAATTTTGATTATTGCAAAGTTGGAGAATTTTTGAGATTTAGAAGAGATACTGGCTTAGGATTCGT ATTCATGTCGAGCTTATTACACTGTAGAAATGTCGTAGATTGTGCGTTTACTTCTTCCACTGTTCGTCGCATTGTCAATT TAGGGTTTTTAGTGGGTAGAATAAGAACGTTGTGTTCAGTGTCACAAGTGAAATCAGAGAATCTCGAAAAGCAAAAACCA TGTTTGGAATCTTTTACAGTTTCTTATCTCGTGGATTCTTGTGGACTGTCTTTGGAATCTGCTAAATCGAATTCCAGATT CGTCAAATTGGTTTCGTCCAAGAAACCAGACTCTGTTCTTGCTCTCTTCAAGGACCATGGCTTCACCAATGACCAGATCA CCAGTGTCATCAAATCCTTTCCTCGTGTTCTGTCACTGAGCCCGGAAGATGTAATCTCGCCCAAGCTCATGTTTTTCAGT TCTATCGGGTTTTCGACCTCGGATACTGCGAAAATGATCTCTTCTTCCCCGAAAATGCTATCATATAGCTTGCACAAAAG ATTGATCCCTTGCTATGATTCCCTCAAGAGCATACTCGTTGAGGAAGAAAGTGTTGTCAAGTGTCTCAAGCGTGGAATCA GATGTTTCTCATTGAAGATTACACATTGTGTGTCTCTTCGTGTCTCCATTTGTAGAGAGCTTGGAGTTCCTGACAAAAGC ATCAAGTGGTTGGTTCAAGCGTCTCCATTCACTTTTTTCTCTCGTGAGAGAAGATTCAACGAGGTCTTAAACAGAGTTTG CAGCTACGGTTTTGACCCGAAAAAGGCGGGTTTTGTTCACGCTATGGTAGCCTTTGATTGCACGAGTGAATCAGCAATGG AGCGGAAATTTAAGTTGTTCCAATGTTTTGGTTGGTCTAAAGAAGATTTCGTCGCAGCGATCATGAGATTCCCAAACTGT GTGACGGTTTCAGATGAGAAGATAATGTACACATTGGAGTACCTTGTAAACAACATTGGTCTGCAAGCTCGTGACATTGT TGCAAGACCGGTGGTGTTATCTCTGAGCATGGAGAAGAGAATCAAACCGAGGAACCAGGTCATCTCTTTGCTTCTCTCCA AAGGACTTGTGAAGAAGGAAGACATCAACTATTTCACTATACTAAAGCTGAAAAGCTCCGAGTTCATGGATAAGTTTGTG CTGAAATATCAGGATGAGATGCCACAACTTGTACAACCCTTTACAAGTAATCGATGA
1=============================Open Reading Frames===========================4937
== == == ==== === +1
+2
========================================================================== +3
-3
======== == === === == === == == === == === -2
== == == === === -1
========================================================================== ESTScan(+)
========================================================================== framefinder(+)
________________________________________________________________________________
1===================================TC291965================================49371>5>7>2>6>3>4># Src EST Id GB# Clone/Protein left right Library/Protein name1 I02A 13-E018427-019-008 CB252934 MPIZp768I038Q 1 666 MPIZ-ADIS-019 2 I02A 54-E011083-014-003 CB257668 MPIZp771L143Q 107 454 MPIZ-ADIS-014 3 ETG NP222460 AC012190 AAF80646 279 4937 Contains similarity to F28O16.19 a putative translation initiation factor IF-2 gi|6143896 from Arabidopsis thaliana gb|AC010718. It is a member of Elongation factor Tu family. ESTs gb|AI994592 and gb|T20793 come from thias gene. 4 I024 BP796349 BP796349 RAFL05-03-L22 343 1008 RAFL5 5 I002 701496576 AI993533 701496576 2411 2935 A. thaliana, Ohio State clone set 6 I008 12974 R30369 161D17T7 2411 2716 Lambda-PRL2 7 I02F BX840935 BX840935 GSLTFB42ZG01 3579 4441 Arabidopsis thaliana Flowers and buds Col-0 Sequence source codes: I02A Max Planck Institute for Plant Breeding Research, ADIS DNA core facility at MPIZ I002 Genome Systems Inc. a wholly owned subsidiary of Incyte Pharmaceuticals Inc., I008 Michigan State University, Dept. of Biochemistry & Molecular Biology I02F Genoscope Centre National de Sequencage, I024 RIKEN Genomic Sciences Center, Plant Functional Genomics Research Group ETGB Expressed Transcripts from GenBank
TC sequence strand: coding strand
| Evidence for coding strand | Evidence for reverse complement | Inconclusive evidence | ||||
|---|---|---|---|---|---|---|
| ESTs | 5' ESTs | (used as +) | 1 | (used as -) | - | (5'/3' source not known) |
| 3' ESTs | (used as -) | - | (used as +) | - | ||
| total | 1 | - | 5 | |||
| Expressed transcripts | - | - | ||||
| Predicted genes | 1 | - | ||||
| Protein hits | 4 | - | ||||
| Trimmed polyA/T | - | - | ||||
Tentative Annotation:
RF|NP_173540.1|15218159|NM_101970 GTP binding {Arabidopsis thaliana} (exp=-1; wgp=0; cg=0), partial (98%) 0
RF|NP_173540.1|15218159|NM_101970 GTP binding {Arabidopsis thaliana} (exp=-1; wgp=0; cg=0), partial (98%) 0
GO annotation
| GO id | GO term | EC# | Type | GOpep link | %sim | %cov |
| GO:0008135 | translation factor activity, nucleic acid binding | - | M | TAIR|gene:2042096 | 83 | 91 |
| GO:0003743 | translation initiation factor activity | - | M | TAIR|gene:3690196 | 90 | 89 |
| GO:0005554 | molecular function unknown | - | M | TIGR_Ath1|At1g21150 | 100 | 100 |
| GO:0008372 | cellular component unknown | - | C | TIGR_Ath1|At1g21150 | 100 | 100 |
| GO:0006413 | translational initiation | - | B | TAIR|gene:3690196 | 90 | 89 |
| GO:0000004 | biological process unknown | - | B | TIGR_Ath1|At1g21150 | 100 | 100 |
| Genome | Chromosome | End5 | End3 | Score | Show genomic alignment with: | |||
|---|---|---|---|---|---|---|---|---|
| Arabidopsis genome | chr1 | 7,406,395 | 7,412,846 | 4886 |  |
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| Acknowledgements | |
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The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416. |
 
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