The DFCI Arabidopsis thaliana Gene Index (AtGI)
AtGI TC Report:
EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. 

>TC294645 TC131678 TC181858
ATGGAACAATACTGGGCTTTATATAAAGAACTAACTCTCTCTCATCTCCGTCTGTTATACTGGGAACGGACTCGACGGAG
CATAGTGAACGGGAAAATAACTGTCAAGCGAGCGAGAGAGAAAGAGAAATCAGAAATGGTGGTTACGGATTCTCCAGTTT
CGGGGAGAATGGCTGATCAGAACATCGATCCTAACACCACGACGAGCCCTAGTCCTAAAGAGAAGCATGTTTCGGCGATT
AAGGCTATCTCCGGCGACGAGAAAGCTCCGTCGAAGGAGAAAAAGAACTACGCGTCGAAGAAATCAACTACCGTAATCCA
GAAATCGCACTGTTTCCAGAATTCTTGGACATTTTGGTTCGATAATCCTTCCTCCAAATCGAATCAAGTCATATGGGGAA
GCTCTTTGAGATCCTTGTATACATTCGCTACCATCGAAGAGTTCTGGAGTCTCTACAATAACATTCATCCTCCAACCAAG
TGGGTTTCGGGGGCGGATCTTTACTGCTTCAAAGATAAGATTGAACCAAAATGGGAAGATCCTATCTGTGCTAATGGAGG
AAAATGGAGTATGATGTTCCCTAAAGCTACACTAGAATGCAATTGGCTTAACACGTTACTTGCGTTGGTTGGTGAGCAAT
TTGACCAAGGAGATGAGATCTGTGGAGCAGTTTTGAACTTCAGAGCGAGAGGGGACAGGATCTCTCTATGGACAAAGAAC
GCTGCAAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTGGAAGGAACTTCTTGGCTACAATGAGACAATCGGATTTAT
AGTTCATGAGGATGCAAAGACTCTTGATCGTGATGCTAAACGTCGATATACTGTATGAGATTCAACAGTTTTACTTGTCA
NTTCGCCGGGGAAATCGAGAAGACGTAAAAGGGGAAGTCAACATGACCTTTAGTTGCCTCTGATCTATCTTTACTGTAAA
AAAAGATGCACATTTAGTTCACATTTTCAACTATCAGAATTGTTGAAACGGATCTGTATCAAAAGTACATGATTTCGTAA
TTTTCTTAGTGGTATAAAGGAAAAGGAATTTCGAAATTACATTTCTTACA
1=============================Open Reading Frames===========================1090

 ===============================================================                  +1
                                                            ==========            +2
                                                                                  +3
                                                                                  -3
                       ============                                               -2
                                                                                  -1
 =====================================================================            ESTScan(+)
                                                                                  
 ===============================================================                  framefinder(+)
________________________________________________________________________________

1===================================TC294645================================1090
                              1                               >
                                   2                          >
                                   <                     3                      

                                                                                                                                                            
#  Src  EST Id              GB#           Clone/Protein   left  right Library/Protein name
                                                                                                                                                            
1  ETG  NP305633            AC068667      AAG51741            1   858 eukaryotic translation initiation factor 4E, putative; 82364-84055
2  ETG  NP305626            AC068667      AAG51734          136   858 eukaryotic translation initiation factor 4E, putative; 72941-74521
3  I002 701668431           AI996792      701668431         478  1090 A. thaliana, Columbia Col-0, root-1



Sequence source codes:

I002 Genome Systems  Inc.  a wholly owned subsidiary of Incyte Pharmaceuticals  Inc.,  
ETGB Expressed Transcripts from GenBank

TC sequence strand: coding strand

Evidence for coding strandEvidence for reverse complement Inconclusive evidence
ESTs5' ESTs (used as +) - (used as -) - (5'/3' source not known)
3' ESTs (used as -) - (used as +) -
total- - 1
Expressed transcripts- -  
Predicted genes2 -
Protein hits3 -
Trimmed polyA/T- -

Tentative Annotation:
homologue to RF|NP_174252.1|15220489|NM_102699 RNA binding {Arabidopsis thaliana} (exp=-1; wgp=0; cg=0), complete 0

GO annotation

GO idGO termEC#TypeGOpep link%sim%cov
GO:0003723RNA binding-MTAIR|gene:2117646 8272
GO:0003743translation initiation factor activity-MTAIR|gene:2117646 8272
GO:0005634nucleus-CTAIR|gene:2117646 8272
GO:0005730nucleolus-CTAIR|gene:2117646 8272
GO:0005737cytoplasm-CTAIR|gene:2117646 8272
GO:0006413translational initiation-BTAIR|gene:2117646 8272

Maps to :
GenomeChromosomeEnd5End3ScoreShow genomic alignment with:
Arabidopsis genome chr1 10,330,362 10,332,313 1018    
Arabidopsis genome chr1 10,339,923 10,341,827 965    
Rice genome chr1 42,793,032 42,794,796 48    

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Acknowledgements
   The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.