The DFCI Arabidopsis thaliana Gene Index (AtGI)
AtGI TC Report:
EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. 

>TC284045 TC91617 TC132456 TC159870 TC192278
ATGGCGCTCGTGAAAACGGAAACGCAGGCGTTAGGAAACCACCAGCATTCTTCAAGGTTTGGTTCGCTTTACGTCGGTGA
TCTTAGCCCAGACGTGACGGAGAAAGATCTCATTGATAAGTTCTCTTTGAATGTTCCGGTAGTGTCCGTTCATCTTTGCC
GTAACTCTGTCACCGGAAAATCCATGTGTTACGCTTACATCAACTTCGATTCACCTTTCAGCGCATCGAATGCTATGACT
CGCTTAAACCATAGTGATTTGAAGGGAAAGGCTATGCGAATAATGTGGTCTCAGAGGGATCTTGCGTACCGTCGTCGTAC
TCGTACTGGTTTTGCAAATCTATACGTAAAGAATCTGGATAGCTCGATTACTAGCAGTTGCTTAGAGCGAATGTTTTGCC
CCTTTGGTTCCATACTTTCTTGCAAAGTCGTTGAAGAGAATGGCCAAAGTAAAGGTTTTGGCTTTGTTCAGTTTGATACA
GAGCAATCTGCTGTATCTGCTCGTTCTGCTCTCCACGGCTCTATGGTTTATGGCAAGAAACTGTTTGTTGCCAAGTTCAT
CAACAAGGATGAAAGAGCAGCTATGGCAGGAAATCAAGACTCTACAAACGTTTATGTGAAGAATCTGATCGAAACTGTTA
CAGATGATTGTCTACATACACTGTTTTCTCAATATGGAACTGTCTCTAGTGTTGTGGTTATGAGGGATGGTATGGGAAGA
TCTAGAGGTTTCGGATTTGTTAACTTCTGCAATCCAGAAAATGCTAAGAAAGCTATGGAATCTCTCTGTGGACTACAACT
TGGATCGAAGAAATTGTTTGTTGGTAAGGCACTCAAGAAAGATGAAAGGAGGGAGATGCTGAAACAGAAATTCAGTGACA
ACTTTATTGCAAAGCCTAACATGAGATGGTCCAATCTGTACGTGAAGAACTTGAGTGAATCAATGAATGAAACAAGACTG
CGAGAAATCTTTGGATGCTATGGGCAAATAGTTTCAGCTAAAGTGATGTGTCATGAGAATGGCAGAAGTAAAGGATTCGG
CTTTGTGTGCTTCTCTAACTGTGAAGAGTCCAAACAGGCTAAAAGATATCTCAATGGGTTCTTAGTTGATGGAAAGCCAA
TAGTTGTTCGAGTTGCAGAGCGCAAAGAGGATCGAATCAAGAGGTTGCAGCAATATTTTCAGGCACAGCCACGCCAGTAC
ACGCAAGCTCCTTCTGCCCCTTCACCAGCTCAGCCAGTCCTCTCATATGTGTCCAGCTCATATGGTTGCTTTCAGCCATT
CCAGGTCGGGACATCTTATTACTATATGGGCAATCAGGTGCCACAAATGTCCGGTCACCAAAACATCACCACCTACGTTC
CAGCTGGGAAAGTGCCTCTCAAGGAGAGAAGATCAATGCATCTGGTCTACAAACATCCGGCTTATCCCGTTGCCAAGAGG
GGTGCTAAACAGACACTGGTTTTTAAGGGTGAGGTTAACAGAAATTTAGAGGCTGCAACATGCTCCAAAGCAACAACATC
TGAGGAGAACCGTAAAGAAGAACGAAGATTGACTTTGTCAGGAAAGTTGTCACCAGAAGTGAAGGTAGAGGAATCAGGAA
AACAATTGCAATGA
1=============================Open Reading Frames===========================1614

 ===============================================================================  +1
                       =========  ========                 ============           +2
                                                                                  +3
                                                          =======                 -3
               ======           ============                       ==========     -2
    =====                                                                         -1
 ===============================================================================  ESTScan(+)
                                                                                  
 ===============================================================================  framefinder(+)
________________________________________________________________________________

1===================================TC284045================================1614
                                       1                                       >
                                       2                                       >
                              3                 >

                                                                                                                                                            
#  Src  EST Id              GB#           Clone/Protein   left  right Library/Protein name
                                                                                                                                                            
1  ETG  NP043597            AC001645      AAB63640            1  1614 poly(A)-binding protein isolog
2  ETG  NP226521            AB023046      BAB01277            1  1614 poly(A) binding protein-like
3  I034 11070546            DR355219      1350131           276   984 CERES-AN65



Sequence source codes:

I034 Ceres  Inc, 
ETGB Expressed Transcripts from GenBank

TC sequence strand: coding strand

Evidence for coding strandEvidence for reverse complement Inconclusive evidence
ESTs5' ESTs (used as +) 1 (used as -) - (5'/3' source not known)
3' ESTs (used as -) - (used as +) -
total1 - -
Expressed transcripts- -  
Predicted genes2 -
Protein hits5 -
Trimmed polyA/T- -

Tentative Annotation:
UP|O04319_ARATH (O04319) Poly(A)-binding protein isolog (Poly(A) binding protein-like), complete 0

GO annotation

GO idGO termEC#TypeGOpep link%sim%cov
GO:0003743translation initiation factor activity-MTAIR|gene:3702582100100
GO:0003723RNA binding-MTAIR|gene:3702582100100
GO:0006413translational initiation-BTAIR|gene:3702582100100
GO:0016071mRNA metabolism-BTAIR|gene:3702582100100

Maps to :
GenomeChromosomeEnd5End3ScoreShow genomic alignment with:
Arabidopsis genome chr3 5,558,682 5,560,999 1589    

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Acknowledgements
   The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.