| The DFCI Arabidopsis thaliana Gene Index (AtGI) |
| AtGI TC Report: | |
| EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. | |
>TC306567 TC58965 TC82142 TC91996 TC101011 TC134139 TC162680 TC174652 TC177866 AAAAAATTAAATTCGATCCCCAAAATTAATAATTCCGTCTTCACCGAGAAAAAATCCAGAGCTTCTTCTCCTCCGACGCG ATGGAGTCTCGTCGGAACCCTCGCGCCGTAGTAGATCCAAAGGTCCGACAAGTCGGTTTCTTCACATCATCTCAACCCGA TTCATCAACTCAACAACAACAACCCGACCCGATCGCTGCTACCTCTGCTTCTTCTTCTTCTTCCACCATTTCTCCTTCCG GTAACTCACTCTCCCCCGTCATGATTCCTCCTCCTCGTCTCAATTCCTCTGATACTTTCCCTCTTCGAGTCGCTGTCGCT GGTGCTGCTGCGTCAGCCGTGTCTCCTTCTTCGTTTTCTTACTCAAGTCGCCGTGATTTCCCTGATGGATCAACGACGGC GTCTCCTGGACGCCATTCCAGGGGTAGTTTCGTAAAATCATCTGTTCCTGTTGCTTCTTCGCTGCCTGGTATTGGGATGG ATTCTATGGCTGCTGCTAAATCTAGTAGTGTTCCTGCTAGTGGTTTAACCACTGTCTCCGTCGTTACCATGCCTCCTGGA CTTTCCGAGAAGGCTAGTGGAATGGAGGTGCAGAGTGACCAGAAGAAGCCATTGAAAGAGAAAACCACTAAAGCTGAGAG ACGAGCTATTCAAGAAGCTCAAAGAGCTGCTAAAGCTGCTGCAAAAGCTGATGGTGGGAAGGTGGCACCAGTGTCCTCAG CCTCGGTGGCTTCAACAAGTGTTAAAGCTGCTAAACCAGCGAAGGCTACATCTCAGAAGAATGATGTTGCTGTTGCTACT GGAGCAGCTGAGAAGAAGGGAGGTCCATCTGAAAAAGATAGAAAGAAAGATGCTCCTCATCCCCGCATGCAGTATGATGA TGAGAGTAGAGTCGTGAAGGCTAAAAGACGTGCTGTTGTAAAACAGACCGAGGCTAAAAACAGGGTTGAGCTATTTAGGC ATTTGCCTCAGTATGAGCATGGCACTCAACTTCCTGATCTCGAGACTAAGTTCTTCCAACTTGACCCTATGCATCCTGCT GTGTACAAGGTTGGTCTTCAATATCTTTCTGGGGATATCTCTGGTGGCAATGCCAGGTGTATTGCGATGCTCCAAGCATT CCAAGAGGTTGTCAAAGATTATTCAACACCGCCTGAGAAGTCTCTTAACAGGGACATGACTGCGAAAATAAGTAGCTACG TCTCCTTCCTCATAGAATGCCGTCCGCTTTCGATTAGCATGGGAAACGCAATACGATTTGTGAAAAACAGGATTGCAAAG CTGCCTATAACACTTTCTGAATCTGAAGCAAAAGCTACTCTTCAGTCAGATATTGAACGGTTCATTAACGAGAAGATCAT AGTGGCAGATACGGTGATAGTCAAACATGCTGTTACTAAAATAAGAGACGGTGATGTCCTTCTGACCTACGGATCTCCCA CTGCTGTTGAGATGGTAATATTACATGCACATGAACTCAGGAAAAAGTTTCGAGTCTTGGTGGTGGATTCTCGTCCAAAG CTTGAAGGGCAGCTACTGCTTCGTAGATTGATCAAACGAGGCATTAACTGTACATACACTCATATAAATGCCATTTCATA TATCATGCATGAAGTCACCAAAGTGTTTTTGGGCGCCTCGTCAGTTTTGTCTAACGGAACAGTTTATTCAAGGGTTGGGA CTGCTTGTGTTGCAATGGTTGCAAATGCATTCCGTGTTCCTGTGCTTGTATGTTGCGAAGCCTACAAGTTCCATGAGAGG GTGCAATTGGATTCAATATGTTCCAATGAGCTTGGTGATCCAAATGCTATTTCAGAAGTTCATGGAAGAGAAGACATAAA CTATTTAGATGGCTTGACCAACAACGCAAACCTGCAGTTTTTGAACTTGATGTATGATGCTACACCTTCAGATTACATTT CCATGATAATCACAGATTATGGCATGGTACCTCCCACAAGTGTGCCTGTCATCGTGAGAGAATATCAGAAAGAACACTTG CTTGTCTAAGCAAAGCTCATTTTTGCGAAAGCTCTTCTTCTCCAACCCCCTCCTCTAGCTCAGGCTCTTCTCATCACAAC CCAGATAGAATAACTACCGGCACTGCCTCCCCTCATCCGCTTCTTTTCCTGAGTACCGGGTTCATTTTTTTTGGCCTTGA CTTGTTTTTAGAAACTTTTGACTCTGTGAAGAGTGCGATTCATCATCCGCCTCTCCGGGAAGATTTTATCGATATCGGTG ATGTTTTTCTTTGTCTGTGATGTATGAGTGAGGCTTCTCTTACTCTCCCTTCTCATGGAGGTTGATACAAATCTTTCTCA GATTCTATGCCAATTTTTGTTGGGTTCAGTCTTCAACATTGGTTACACGTGTTCTCATGCTTTACTTGTATTACAGTCAT ATATGCACTGCTCGTTAAATCAGTTCAAAAAGACTCAATTACATCACAAATTGTCTCTTAAATAAACAATGTTTCGATAG GTCGAAATGTTGAAAGAGATCTTTTCGAGGGTTTACTCTATTGTGTGAGAACTTGATCCTTGCCACTGACCGGAGTAACC ACACCGAGTATCACGAAACCGCCAAGAATAAGGATTAGAACGCCCATTGTGTTGACTAACATTGCCTCTGTGGAATACCG AGTTATCACTTGATTCACTTGCAGGAACGTCACCTTCTCAAGTATCCCTGTGGTTGCAGTCACCAACGCCAATGCATATA TGGAAATCCCTAAGAACACATGCCATGGCATCAAACTGGCTCTGCTGTTTCTTGAACCACCCGGGTACCAATAAGTCACA AACCCTGCAGCCCACTGGAATGCAAAGAGAAAGAGGCAAGCAAGGCCGAGCCACGAATGGAGACTGTAGAAATTTTCGAT CCCTTTGTCAATATGGAACTTGAGAGCAGCCCACACTCCGATCAGGCTTAGAATAAATGCTGTGAGTTGTAGTGTAAGAT GAACCAGTTTTTTCAAGTTCTTTGTACCTTGAACTGACTTATATGCTAACATAGCTTCTCCATTGAAGAGTATGAGTCCA ATCACCATCATCACTGGATGAACATTAAAGATGTGATCTTTGTTATCAGAAGAAAGAGCTAAGCCTCCTCTGTAATGAAC AGTCCATGTCAAAACCAAAGCCGCGATGATGAAACCCAAAACTCTCACTACCATGAAGATCGGAAATCCACCCAGCACCG GAACCGCCATACTAAGCCCAGAAAATGCGAGTCTTTTATACGGCGATCAAAATCAGGATGAATTAGGGCTAGGGTTTTAG TTTTTAGTCGAATTTTGGGGATTTCTGAATCACCCCCTGTGTTTTAGATCGGCAATTACTCGACTTTGAGTTTGAGGTC
1=============================Open Reading Frames===========================3359 === ===== ==== ====== ==== +1 ==== === +2 ============================================== ==== ==== +3 ==== ================ -3 ==== === === -2 === -1 ==================================================================== ESTScan(+) ==================================================== framefinder(+) ________________________________________________________________________________
1===================================TC306567================================33591a>13> <15<32................1b> <16<332>14> <17<353> <18<344> <205> <216a> <22............................................<6b<367>24> <378> <389> <2510> <2611>27> <3912>28> <19a..............<19b23a> ........<23b29>30>31a> .............<31b# Src EST Id GB# Clone/Protein left right Library/Protein name1a I034 4498807 DR280791 1010351 1 512 CERES-148 1b I034 4661231 DR382798 1010351 681 1335 CERES-148 2 I034 5789923 DR280786 1161102 15 484 CERES-AL45 3 I034 6632497 DR280790 1196672 15 322 CERES-AL45 4 I034 6622271 DR280792 1186446 15 392 CERES-AL45 5 I034 5790410 DR280793 1161589 15 469 CERES-AL45 6a I024 AV825869 AV825869 RAFL07-16-F13 31 469 RAFL7 6b I024 AV792728 AV792728 RAFL07-16-F13 1872 2317 RAFL7 7 I034 6627116 DR280789 1191291 31 346 CERES-AL45 8 ETG NP412794 AY062523 AAL32601 31 2317 Unknown protein [Arabidopsis thaliana] 9 I034 6624215 DR280787 1188390 43 399 CERES-AL45 10 ETG NP236583 AB005231 BAB10154 81 2009 contains similarity to guanine nucleotide exchange factor~gene_id:MBB18.19 11 ETG NP814927 BT008788 AAP68227 81 2009 At5g38640 [Arabidopsis thaliana] 12 I034 5736893 DR280788 1144453 154 257 CERES-AL46 13 I008 M64J03STM BE526202 600034813R1 779 1019 Arabidopsis developing seed 14 I034 11072083 DR355754 1351668 973 1499 CERES-AN65 15 I024 BP786408 BP786408 RAFL07-99-B19 1899 2317 RAFL7 16 I024 BP790473 BP790473 RAFL07-43-G06 2012 2427 RAFL7 17 I024 BP782596 BP782596 RAFL07-82-N10 2039 2445 RAFL7 18 I006 AV561706 AV561706 SQ156c05F 2093 2350 Arabidopsis thaliana green siliques Columbia 19a I034 976824 DR380526 124838 2306 2873 CERES-148 19b I034 157646 DR280727 124838 2900 3359 CERES-148 20 I023 Ceres:124838 Ceres:124838 2307 3359 full-length cDNA from Ceres, Inc. 21 ETG NP485084 AY085028 AAM61586 2307 3359 cytochrome b-561 [Arabidopsis thaliana] 22 ETG NP313485 AB049627 BAB21521 2342 3333 cytochrome b561 23a I024 AU229221 AU229221 RAFL16-82-G24 2361 2835 RAFL16 23b I024 AU238085 AU238085 RAFL16-82-G24 2696 3318 RAFL16 24 I024 BP626096 BP626096 RAFL17-46-E05 2361 2797 RAFL17 25 I034 4661286 DR382854 1011426 2361 3027 CERES-148 26 ETG NP568583 AK117270 BAC41943 2361 3318 putative cytochrome b-561 [Arabidopsis thaliana] 27 I024 BP623885 BP623885 RAFL17-38-D09 2384 2805 RAFL17 28 I024 BP632139 BP632139 RAFL17-26-B14 2384 2754 RAFL17 29 I024 BP578204 BP578204 RAFL14-16-O11 2391 2864 RAFL14 30 I024 BP663600 BP663600 RAFL21-48-N08 2393 2753 RAFL21 31a I00E ATTS2964 Z33925 VBV12-10992 2422 2767 Versailles-VB 31b I00E ATTS1779 Z26702 VBV12-10992 2986 3296 Versailles-VB 32 ETG NP1419650 BT024611 ABD43009 2518 3210 At5g38630 [Arabidopsis thaliana] 33 ETG NP236582 AB005231 BAB10153 2518 3210 cytochrome b-561 34 ETG NP033889 AF132115 AAD45585 2521 3210 cytochrome b-561 35 I034 1133365 DR280728 254740 2827 3326 CERES-147 36 I034 960911 DR280729 158766 2865 3359 CERES-148 37 I024 BP807350 BP807350 RAFL24-13-H06 2928 3317 RAFL16 38 I006 AV552323 AV552323 RZ26g01R 2968 3326 Arabidopsis thaliana roots Columbia 39 I024 BP814259 BP814259 RAFL22-35-C01 2989 3358 RAFL19 Sequence source codes: I00E Laboratoire de Biologie Moleculaire des Plantes CNRS, Gigot Claude / L512 I006 Kazusa DNA Research Institute, The First Laboratory for Plant Gene Research I023 Inc., Ceres I008 Michigan State University, Dept. of Biochemistry & Molecular Biology I034 Ceres Inc, I024 RIKEN Genomic Sciences Center, Plant Functional Genomics Research Group ETGB Expressed Transcripts from GenBank
TC sequence strand: coding strand
| Evidence for coding strand | Evidence for reverse complement | Inconclusive evidence | ||||
|---|---|---|---|---|---|---|
| ESTs | 5' ESTs | (used as +) | 11 | (used as -) | 8 | (5'/3' source not known) |
| 3' ESTs | (used as -) | 7 | (used as +) | 7 | ||
| total | 18 | 15 | 2 | |||
| Expressed transcripts | 1 | 5 | ||||
| Predicted genes | 2 | 1 | ||||
| Protein hits | 4 | - | ||||
| Trimmed polyA/T | - | - | ||||
Tentative Annotation:
GB|AAP68227.1|31711742|BT008788 At5g38640 {Arabidopsis thaliana} (exp=-1; wgp=0; cg=0), complete 0
GB|AAP68227.1|31711742|BT008788 At5g38640 {Arabidopsis thaliana} (exp=-1; wgp=0; cg=0), complete 0
GO annotation
| GO id | GO term | EC# | Type | GOpep link | %sim | %cov |
| GO:0003743 | translation initiation factor activity | - | M | TAIR|gene:2051778 | 96 | 97 |
| GO:0005525 | GTP binding | - | M | TAIR|gene:2051778 | 96 | 97 |
| GO:0008805 | carbon-monoxide oxygenase activity | EC 1.2.2.4 | M | TIGR_Ath1|At5g38630 | 100 | 100 |
| GO:0005851 | eukaryotic translation initiation factor 2B complex | - | C | TAIR|gene:2051778 | 96 | 97 |
| GO:0016021 | integral to membrane | - | C | TIGR_Ath1|At5g38630 | 100 | 100 |
| GO:0006413 | translational initiation | - | B | TAIR|gene:2051778 | 96 | 97 |
| GO:0006118 | electron transport | - | B | TIGR_Ath1|At5g38630 | 100 | 100 |
| Genome | Chromosome | End5 | End3 | Score | Show genomic alignment with: | |||
|---|---|---|---|---|---|---|---|---|
| Arabidopsis genome | chr5 | 15,483,222 | 15,487,984 | 3315 |  |
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| Acknowledgements | |
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The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416. |
 
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