The DFCI Arabidopsis thaliana Gene Index (AtGI)
AtGI TC Report:
EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. 

>TC289097 TC134873 TC152833
ATGTCAGGAGTTTGGGTGTTCAATAACGGAGTGATACGTCTAGTGGAGAACCCGAACCAGTCCGGTGGAGTTTCCACACA
GTCGCACGGCCGGAGAAATGTCTTGGTTTACTTGCCGACCGGTGAAGCCGTCTCATCTTACTCGTCGCTCGAACAAATCC
TAAGGAGCCTCGGGTGGGAAAGATACTTCAGTGGAGACTCCGATCTCATCCAGTACCACAAACGCTCCTCCATCGACCTC
ATCTCCTTACCAAGAGACTTCTCCAAGTTCAACTCCGTTTACATGTACGACATCGTTGTCAAGAACCCTAATTCCTTCCA
CAAACAAACGATGCCTCGTAAAGGATTATCCAATTTCGATGATTATGATGATGGTTTTGATGATGATGACGATGCTTTTG
ATTATGACTATGATGTTGATATAGATGAACATGAAGAAGAAGCTGCTGCTGAACCAAAGGAAGAAATTGCTAAAACGCAA
GGGCTTTGGCGATGTGCTATCTGTACATATGACAATGTTGAGACTATGTTTGTGTGTGATATCTGCGGTGTTCTTCGTCA
TCCTGTCGCCGGAAATCAAAGTATCAATAAGAATACAGCTGTTCGTGTTGTGAGTCTCTTTGCAATTGTGGTGTTGCAAA
GGCGTTATTCTGACAGTTCCTTTTCAACTTATGTAGCACCTTTCAAGTTTGATGCTCCATCGCCAGATGATTTAGTCTCC
AATGGACTAACATCCTCAAAAACTGGTCCAAAAGGCTCAGGTGATGCTAGCATGAGACAGAAGGAGAAGCAAGATAGCGT
AGAACAGAAACCTTTAAAGAAAGGAGGAGATAGTTCAGAAACAAGCTCCCGAGGTAGACATGATAAACTTGATGATAAGG
GCGGTGCTGGCGGCATAAAATCAGGCAAAAGTTTGCCAAAAGCAAAAGCAGATATGTCTAATGAGACAAGTTCGTCCTCT
AAATATATGGAGACGTCGGAGAGTCTTACTGGTACTATGAACAAGATGTCTTTGATTGGGGAAACAGAAAACTCTAGCGA
TATTAAAATTAGAGGACCAAAATCACAATCTAAGCATAAGCCAGAGGAGTGGATGCTTCTTGATAAAGAATCAGATGCAC
TAAGCCAGCTTAATCTTGCCATCGTGGGGCATGTTGATTCCGGTAAGTCTACACTTTCGGGTAGATTATTGCATCTTTTG
GGAAGAATATCGCAGAAGCAAATGCACAAGTATGAGAAAGAAGCAAAGTTGCAGGGCAAAGGGTCCTTTGCATATGCCTG
GGCATTGGATGAGAGTGCTGAAGAGAGGGAACGAGGAATAACAATGACTGTGGCTGTTGCTTATTTCAATTCCAAAAGAC
ATCATGTTGTTTTGCTCGACTCTCCTGGACACAAAGATTTTGTTCCAAACATGATAGCAGGAGCAACACAAGCAGATGCT
GCGATTCTTGTCATAGATGCATCTGTTGGTGCTTTTGAAGCTGGTTTTGATAATTTGAAAGGGCAGACAAGGGAGCATGC
ACGGGTTCTGAGAGGTTTTGGCGTGGAGCAAGTCATAGTTGCAATCAACAAAATGGATATTGTTGGCTACTCAAAGGAAA
GATTTGATTTGATTAAGCAGCACGTTGGATCTTTTTTGCAATCCTGTCGTTTTAAGGATTCTTCTCTGACATGGATTCCA
TTAAGTGCCATGGAAAACCAAAACTTGGTGGCAGCTCCCTCTGATAACCGCCTATCCTCATGGTATCAAGGTCCATGTTT
ATTGGATGCCGTCGACTCTGTCAAGTCTCCTGATAGAGACGTCTCAAAGCCTCTACTCATGCCTATATGTGACGCTGTAA
GATCAACTTCGCAAGGGCAGGTATCTGCATGTGGCAAACTTGAAGCTGGAGCTGTCCGGCCAGGATCTAAGGTAATGGTT
ATGCCATCAGGAGATCAAGGAACCATACGATCACTAGAGCGTGACTCTCAGGCTTGCACCATTGCAAGAGCTGGAGATAA
CGTAGCGTTAGCGTTGCAAGGGATCGATGCAAATCAAGTAATGGCAGGAGATGTATTGTGCCATCCTGATTTCCCTGTAT
CAGTAGCAACTCATTTGGAATTGATGGTGCTCGTCTTGGAAGGCGCAACACCGATCTTGCTCGGTTCTCAGTTGGAGTTT
CATGTGCATCATGCAAAGGAAGCAGCAACAGTTGTGAAACTTGTGGCAATGCTTGATCCCAAAACAGGGCAGCCAACAAA
GAAGTCTCCTCGTTGTCTAACTGCTAAACAGAGCGCAATGCTTGAGGTTAGTCTCCAAAATCCAGTATGTGTGGAGACAT
TTTCTGAGAGTAGAGCTCTTGGAAGAGTGTTCCTTAGATCATCGGGAAGAACTGTTGCTATGGGCAAAGTTACTCGGATT
ATCCAAGACTCATAAACATTCTCTGTTGTTGTACGAGTTTTACTTGTTCACTATAAATCAAGTCGTCCCAAGTTTTGTCT
GCAATACAGTATCAGGAAATATCCTAAAATAGATCATGCAAAATTCGAATCAAATTTTATTGTGTAATTCAATTTATCCA
TTTTTTTTTGTGTTTAACACAATAAATCTTTCTTCCT

1=============================Open Reading Frames===========================2597

 ==========================================================================       +1
              ======              ======                                          +2
                                                                                  +3
            ======                  ==========                                    -3
  ===                              ====         ===                               -2
     ===            ==============     ====== ===                                 -1
 ==========================================================================       ESTScan(+)
                                                                                  
 ==========================================================================       framefinder(+)
________________________________________________________________________________

1===================================TC289097================================2597
                                    1                                    >
                                                           2                   >
                                              3     >     <         5         
                                                4     >        6     >
                                                                   7       >

                                                                                                                                                            
#  Src  EST Id              GB#           Clone/Protein   left  right Library/Protein name
                                                                                                                                                            
1  ETG  NP211044            AL353995      CAB89379            1  2415 putative protein
2  ETG  NP1420071           AK222144      BAD95204         1317  2597 putative protein [Arabidopsis thaliana]
3  I024 BP834344            BP834344      RAFL22-99-I21    1318  1708 RAFL19
4  I008 M44A10STM           BE523957      M44A10           1434  1792 Arabidopsis developing seed
5  I024 AV781778            AV781778      RAFL04-09-B03    1890  2531 RAFL4
6  I02A 32-L020166-066-001  CF652069      MPIZp2001P071Q   1914  2264 MPIZ-ADIS-066
7  I02A 06-E9624-013-004-L  CB260012      MPIZp770L014Q    1949  2476 MPIZ-ADIS-013



Sequence source codes:

I008 Michigan State University, Dept. of Biochemistry & Molecular Biology
I024 RIKEN Genomic Sciences Center, Plant Functional Genomics Research Group
I02A Max Planck Institute for Plant Breeding Research, ADIS DNA core facility at MPIZ
ETGB Expressed Transcripts from GenBank

TC sequence strand: coding strand

Evidence for coding strandEvidence for reverse complement Inconclusive evidence
ESTs5' ESTs (used as +) 2 (used as -) - (5'/3' source not known)
3' ESTs (used as -) 1 (used as +) -
total3 - 2
Expressed transcripts1 -  
Predicted genes1 -
Protein hits5 -
Trimmed polyA/T- -

Tentative Annotation:
RF|NP_196625.2|30683251|NM_121101 ATP binding {Arabidopsis thaliana} (exp=-1; wgp=0; cg=0), complete 0

GO annotation

GO idGO termEC#TypeGOpep link%sim%cov
GO:0005554molecular function unknown-MTAIR|gene:3715248 9490
GO:0003746translation elongation factor activity-MTAIR|gene:2142468100100
GO:0008372cellular component unknown-CTAIR|gene:3715248 9490
GO:0009739response to gibberellic acid stimulus-BTAIR|gene:3715248 9490
GO:0009911positive regulation of flower development-BTAIR|gene:3715248 9490

Referenced by :
Tentative Ortholog Group 1000832 (general group)
Tentative Ortholog Group 1022341 (general group)
Tentative Ortholog Group 1128651 (general group)
Tentative Ortholog Group 1128652 (general group)
Tentative Ortholog Group 1169827 (general group)
Tentative Ortholog Group 975562 (general group)
Maps to :
GenomeChromosomeEnd5End3ScoreShow genomic alignment with:
Arabidopsis genome chr5 3,358,935 3,364,597 2550    
Rice genome chr2 15,340,920 15,343,522 52    

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Acknowledgements
   The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.