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The DFCI Arabidopsis thaliana Gene Index (AtGI)
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AtGI TC Report: |
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EST IDs are linked to AtGI EST reports. ET# s are linked to
qcGene
reports. GB#s are linked to
GenBank
accessions.
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>TC280681 TC82035 TC103256 TC137045 TC156706 TC178829
GCCTCTTTTATCTCTCTCTCTCATAAACCCACACTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTCTCTTTC
TTCTGCTTTTCCAAAGCTTTCCAAAGCCAACAAAGGTCTCTCTCTGTAGCTCCTTTTCCTCTCAGCAGCCATGGAAGAAA
AAACTCATCATCATCATCACAGTACCAACAAACACATCCCTAGTTCCAAATCAAGAACACCTCTTCTCCACAAGCCTTAT
CATCACCATGTTCAAACCAATCCTCCTCCTTTTCTTTTGCACCCTTCTTCTCACCAAAACCTCAATCTTGTTGCCTCAAA
TCTTCCTTCTAGCTACTACTACTATTACTACTGCTACTTCTACTCTCAATTTCACAACTCTCTTCCTCCTCCTCCTCCTC
CTCATCTTCTTCCTCTTTCTCCTCCTCTTCCTCCTTTACTTCCTCTTCCTCCTCCTCACTCAATGACCCGTTTCCACAAA
TCTCTCCCTGTTTCTCAAGTTGTGGAGAGAAAGCAGCAACACCAACAGAAGAAGAAGATACAAGTTTCTAACAACAAAGT
GAGTGGATCCATAGCAATAGAAGAAGCAGCATTAGTGGTTGCTAAAAGACCGGACTTTGGTGGTCAAGATGGTTCTGTCA
TTTATCTCCTCGCCAACCATTTTCTTGTCAAGTTTGATTCGTCACAGAGGATTTACCATTACAATGTTGAGATATCTCCA
CAGCCTTCAAAGGAAATTGCTAGAATGATCAAACAGAAGCTTGTTGAGACAGATCGTAATAGCTTCTCTGGTGTTGTTCC
GGCTTTTGACGGCAGGCAAAACATTTACAGCCCTGTGGAGTTTCAGGGAGATAGGCTTGAGTTCTTTGTTAATCTCCCTA
TCCCATCTTGCAAGGCTGTGATGAATTACGGTGACTTGCGTGAGAAGCAACCTCAGAAGAAGATTGAGAAACTGTTTAGG
GTTAATATGAAGCTTGTGTCCAAGTTTGATGGTAAAGAACAGAGAAAGGAAGGAGAGGATTGGGCTCCTCTGCCTCCAGA
ATACATTCATGCTCTTGATGTTATCTTGAGAGAGAATCCAATGGAGAAGTGTACATCGATCGGAAGATCGTTTTACTCGA
GTTCTATGGGTGGATCTAAGGAGATTGGAGGAGGAGCTGTTGGACTCAGAGGGTTTTTCCAGAGTCTTAGACATACTCAG
CAAGGTTTAGCACTTAACATGGATCTCTCAATCACAGCTTTCCATGAAAGTATTGGAGTAATAGCTTACTTGCAGAAGCG
GCTCGAGTTTCTTACGGACCTTCCTAGGAACAAAGGTAGAGAATTGAGTTTAGAGGAAAAGAGAGAAGTGGAGAAAGCAC
TTAAGAACATAAGAGTCTTTGTTTGCCATAGAGAAACAGTTCAAAGGTATCGAGTTTATGGGTTAACAGAGGAAATTACG
GAGAATATATGGTTTCCTGATAGAGAAGGGAAATATCTAAGGCTTATGAGTTACTTCAAAGATCATTATGGTTATGAGAT
TCAGTTCAAGAACTTGCCGTGTCTGCAAATCAGTAGGGCAAGACCTTGTTACCTTCCTATGGAGCTATGCATGATTTGTG
AAGGTCAAAAGTTTCTTGGAAAGCTATCAGATGATCAAGCTGCAAAGATCATGAAAATGGGCTGCCAAAAACCTAATGAA
AGGAAAGCTATTATTGATAAGGTTATGACAGGATCGGTCGGTCCATCGAGCGGAAACCAAACAAGAGAATTCAACCTTGA
GGTTTCAAGAGAAATGACATTGCTGAAAGGAAGAATACTTCAGCCACCAAAGCTTAAACTTGACCGGCCAAGGAACCTTA
AAGAAAGTAAAGTTTTTAAAGGAACTAGAATTGAGAGATGGGCTTTGATGAGTATTGGAGGCAGCTCTGATCAGAAATCT
ACCATTCCCAAGTTCATAAACGAGCTTACTCAAAAGTGTGAGCATTTGGGAGTCTTCTTAAGCAAGAACACATTAAGCAG
TACCTTCTTTGAACCATCACACATACTCAACAACATTTCGCTTCTCGAATCAAAACTGAAGGAGATTCAAAGAGCGGCAT
CGAACAATCTCCAGCTGATTATTTGTGTAATGGAGAAAAAACATAAAGGGTACGGAGATCTAAAGAGGATATCAGAGACA
AGAATTGGTGTTGTGACACAATGCTGCTTATACCCTAACATCACTAAGCTCAGTTCTCAGTTCGTTTCGAACTTAGCTCT
CAAGATAAACGCCAAGATCGGTGGATCCATGACCGAGCTCTACAACTCGATACCTTCTCACATCCCTAGACTGCTTAGAC
CCGATGAGCCGGTTATCTTCATGGGAGCTGATGTAACGCATCCTCATCCATTCGATGATTGTAGCCCTTCAGTAGCGGCT
GTGGTAGGGAGCATAAACTGGCCAGAAGCTAACCGATACGTCTCAAGAATGAGGTCTCAGACTCATAGGCAAGAGATCAT
ACAAGATCTTGACTTGATGGTCAAGGAACTTCTTGATGATTTTTACAAAGCGGTAAAAAAGCTTCCGAATCGAATCATAT
TCTTCAGGGACGGTGTTAGCGAGACACAGTTCAAGAAAGTTCTCCAAGAAGAGCTTCAATCGATAAAAACTGCTTGTTCG
AAGTTCCAAGATTACAATCCAAGCATCACATTCGCCGTGGTTCAGAAAAGACACCACACAAGGCTGTTCCGGTGCGATCC
AGACCATGAGAACATACCTCCTGGTACAGTGGTTGATACAGTGATAACTCATCCGAAAGAGTTTGATTTTTATCTCTGTA
GCCATTTAGGAGTGAAGGGCACGAGCAGGCCAACGCATTACCATATTCTATGGGACGAGAACGAGTTCACTTCAGACGAA
TTGCAGAGACTTGTGTATAATTTGTGTTACACTTTCGTGAGGTGCACGAAACCTATATCGATTGTGCCACCGGCTTATTA
TGCTCACCTTGCTGCGTACAGAGGAAGGCTATACATCGAGAGATCATCTGAATCTAATGGAGGATCCATGAATCCTTCTT
CTGTGTCTCGTGTTGGTCCTCCAAAGACGATTCCTCTTCCTAAATTAAGTGATAATGTCAAGAATCTCATGTTTTACTGC
TGATTCTTTAATATATAAAAAAATTGATCTTGATACTGTTA
1=============================Open Reading Frames===========================3161
=========================================================================== +1
====== === +2
+3
============ ===== === ======== -3
-2
=== === == === ==== ==== -1
=========================================================================== ESTScan(+)
=============================================================================== framefinder(+)
________________________________________________________________________________
1===================================TC280681================================3161
1 >
2 >
3a > < 4
........................< 3b
# Src EST Id GB# Clone/Protein left right Library/Protein name
1 ETG NP858913 AY394564 AAQ92355 1 3161 ZIPPY [Arabidopsis thaliana]
2 ETG NP313552 AC073178 AAG60096 151 3123 pinhead-like protein
3a I00E ATTS3323 Z34563 VBVCF10 1894 2300 Versailles-VB
3b I00E ATTS3322 Z34562 VBVCF10 2836 3157 Versailles-VB
4 I006 AV556836 AV556836 SQ053e11F 2610 3160 Arabidopsis thaliana green siliques Columbia
Sequence source codes:
I00E Laboratoire de Biologie Moleculaire des Plantes CNRS, Gigot Claude / L512
I006 Kazusa DNA Research Institute, The First Laboratory for Plant Gene Research
ETGB Expressed Transcripts from GenBank
TC sequence strand: coding strand
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Evidence for coding strand | Evidence for reverse complement |
Inconclusive evidence |
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| ESTs | 5' ESTs | (used as +) | - | (used as -) | - |
(5'/3' source not known) |
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| 3' ESTs | (used as -) |
1 | (used as +) | - |
| total | 1 |
- | 2 |
| Expressed transcripts | 1 | - | |
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| Predicted genes | 1 | - |
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| Protein hits | 4 | - |
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| Trimmed polyA/T | - | - |
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Tentative Annotation:
UP|Q9C793_ARATH (Q9C793) Pinhead-like protein (ZIPPY), complete
0
GO annotation
| GO id | GO term | EC# | Type | GOpep link | %sim | %cov |
| GO:0008372 | cellular component unknown | - | C | TAIR|gene:2007110 | 100 | 100 |
Maps to :
| Genome | Chromosome | End5 | End3 | Score | Show genomic alignment with: |
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| Arabidopsis genome |
chr1 |
26,105,190 |
26,108,829 |
3152 |
 |
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| Fission yeast genome |
chr3 |
1,644,698 |
1,647,673 |
47 |
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| Tetraodon genome |
chr13 |
11,753,940 |
11,756,768 |
37 |
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Comments and suggestions : Contact Us
| Acknowledgements |
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The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416. |
