The DFCI Arabidopsis thaliana Gene Index (AtGI)
AtGI TC Report:
EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. 

>TC281565 TC87533 TC138463 TC160245 TC181724
ATGGATACTCGTCGCGGAGCTCTTGCGGTTCCTAAAGTCCGTCGAGTAGGTTTCTTCACATCAATCGAGCCGCCTCCAGA
ATCATCATTACAACGACCAAATCGAAGCCAATCCGGTCCAGTAGATGCAACCACCTCTTCTTCTCCTCTCTCCGATTCAC
CTTCCGGTAACTTAATTTCTCCGGTCTTAATTCCACCGTCGCGTCACCATTCCGACAATTTAACCTCTCGCGTTGCTGCT
GCTGCTGCTGCTCCTGTGCCCGTCCCTGGACCTGCCGCTTTCCGCCGATACTTAACTCCTGAACGGACTCTTCTTCACGT
TGGTAGTTACAATCCTCCGGATTCGCTTCTCGGGACATCATCACCCTCGAGTAACGGAGGGCTTTCTGAGGATTCGGCTT
CTCTGTTTGGGTTCCAACGGAGTGATTCGACGAAATTATCAGCAAGCTTACCTAATGGAGGCTTTGATTTGACTCTAGCT
GTTAGAGCTCCTCAGGAATCTGAAACCAAAATTGCGACCACGTCTGCTTCTCAAGGGAAAAAGAAGATCGCCGAAGTTTC
TGAGACCTTTGTGGTGAATTGTGATCCCCAAGTAACATCGGATGAGGCAGCCTGTAGTGCCGTAGGGACTGGAGTTTTAG
GGAGACCTTATAGCGGTATTTGGAGAATGTTTAAAGTTGAGTTTGGTTTAGAAGTCTGCTGTTGTGGACCTGTGGTCTGT
GTGAAATGCATACGTTTGCGGAGGTGGTACAACATACTCCCAAATCAAGCACGTCAAGGAAGCTGCATCTCTATAATGGG
AAGAATAAATCCTGCAGGAAAGAGTGAGTCTGCGACCACAAAACCCCAGAAGGAAAAGGAACCAAAAGCATTGAAAGATA
AAACCACTAAAGCAGAAAGACGTGCCATCCAAGAGGCACAACGGGCAGCAAAAGCTGCTGCAAAAGGCGAAGGAAGCAGG
CGTGCAGATGAGTCTGGTAGAGCTAATCCTGGCAAGGCTGCCATAAAGCCCCAACCAAAGAAAGAAAGACTTCCCGTCAC
GTCCTCTGTTTCTGAAAAAACAGCTGTAGCAGTAGAAAAAGAGAAGAGGATGGATGTCCCTCAGACACAAATGCAGTATG
ATGATAAAAGCCGAGTGGATAAAGCTAAGAGGCGAGCTGTGGTTGAACAGACCGAGAGCAAGAACAAAGTTGAATTATTT
CTCCATCTTCCTCAATACGAACGCAGCAATCAGCTTCCCAATTTAAGCTCCAATTTTTTCACACTCGATTCCATACACCA
TGCAGTCTATAAGGTGGGTTTGCAACATTTGGCTGGAGATATATCTGGGGACAATGCACGATGTATTGCCATGCTCCAAG
CATTTCAAGAAGCTATAGAAGATTACAGTACACCTCCTATGAAAGACCTGACCATGGACTTGACAGCCAAGATAAACGGT
TATGTTTCATTCTTGATAGAATGTCGTCCCCTCTCCATGAGCATGGGAAACGCAATCAGGTTCCTGAAGAACCAAATCAG
AAAACTACCTGTAAACCTGTCAGAATCAGAGGCAAAAAGTTCCCTCTGTTCTGACATTGGCCGGTTCATAGACGAGAAGA
CAATTATTGCAGATAAGGCAATCGTGCAACACGCCGTAACAAAAATCAGAGACGGAGAAGTTCTTCTTACATATGGATTC
TCTTGTGTGGTTGAAATGATTCTCCTATACGCCCATGAGATTGGGAAAAAGTTCCGCGTAGTGATTGTAGACTCACGCCC
TAACCTTGAAGGGCAAAAGCTACTCCGTAGACTTGTGACTCGTGGCCTCGACTGTACCTACACTCATATAAATGCCATTT
CCTACATCATGCGTGAGGCTACACGTGTTTTTCTCGGTGCTTCATCAATATACTCGAATGGAACTCTTTACGCAAGAGTT
GGCACATCCTGCATTGCAATGGTTGCAAACGCATTTAGTGTTCCTGTAATTGTTTGTTGTGAAGCTTACAAGTTCCATGA
AAGAGTCCTACTTGATTCAATCTGCTCCAACGAACTTGGCGATCCTGACGCCGTAGCCAACATACCATCATTTAGAACCA
ATGCAAAGCATTCAAAGACAATGGACAACAACAAAAACCTTCAGTTTCTGAATCTAATGTATGATTCTACTCCTTCAGAA
TATATATCTATGATTGTTTCGGATTATGGAATGAGCAATTTCCATTTAGTGTCTGATACATTTGTGATTTGTGTATGTGT
GAATAGATTCCTCCGACGAGTATACCAGTGA
1=============================Open Reading Frames===========================2271

 ===============================================================================  +1
                                        =====                   ====              +2
                           ===                ========                            +3
   ===========  ====                     ====                   ====              -3
                        ==== =====              =====                             -2
                                                                   ====           -1
 ===============================================================================  ESTScan(+)
                                                                                  
 ===============================================================================  framefinder(+)
________________________________________________________________________________

1===================================TC281565================================2271
                                       1                                       >
                                       2                                       >

                                                                                                                                                            
#  Src  EST Id              GB#           Clone/Protein   left  right Library/Protein name
                                                                                                                                                            
1  ETG  NP251536            AC016041      AAF69705            1  2271 F27J15.24
2  ETG  NP274773            AC084414      AAG29736            1  2271 guanine nucleotide exchange factor eIF-2B delta subunit, putative



Sequence source codes:

ETGB Expressed Transcripts from GenBank

TC sequence strand: coding strand

Evidence for coding strandEvidence for reverse complement Inconclusive evidence
ESTs5' ESTs (used as +) - (used as -) - (5'/3' source not known)
3' ESTs (used as -) - (used as +) -
total- - -
Expressed transcripts- -  
Predicted genes2 -
Protein hits4 -
Trimmed polyA/T- -

Tentative Annotation:
GB|AAF69705.1|7770335|AC016041 F27J15.24 {Arabidopsis thaliana} (exp=0; wgp=1; cg=0), complete 0

GO annotation

GO idGO termEC#TypeGOpep link%sim%cov
GO:0003743translation initiation factor activity-MTAIR|gene:2051778 8986
GO:0005525GTP binding-MTAIR|gene:2051778 8986
GO:0005851eukaryotic translation initiation factor 2B complex-CTAIR|gene:2051778 8986
GO:0006413translational initiation-BTAIR|gene:2051778 8986

Referenced by :
Tentative Ortholog Group 1039424 (general group)
Tentative Ortholog Group 973616 (general group)
Maps to :
GenomeChromosomeEnd5End3ScoreShow genomic alignment with:
Arabidopsis genome chr1 18,117,574 18,121,215 2232    

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Acknowledgements
   The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.