The DFCI Arabidopsis thaliana Gene Index (AtGI)
AtGI TC Report:
EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. 

>TC303691 TC9825 TC51000 TC54705 TC58932 TC79957 TC90672 TC139065 TC162612 TC173024
GAAATTTTAGAAAGGGAAAAAAAAAAAAGGTTACGCGAAGGAAACCAAAAACCCTTTAGGGACTTGGATAGAAAAAAAAA
AACCATTTTGTGCATCTTCTTCAAGCTGCGCCGCTTTCTCACTCTTTTTTATCTCTCAAATTTGACCTTCTCCGTTGTTC
TTTCGCATCGCTCAGGAGCAGAAGCTTCAATCTTTGATAATGTCGAGGAACAAGGGTTTGGCTGAGCAAGATCTTAAAAA
ATTGGATGTAACTGTGCTACATCCTCTGTCTCCTGAGGTCATTTCTCGCCAGGCCACTATTAATATAGGAACCATTGGTC
ATGTCGCTCATGGAAAGTCCACTGTTGTTAAAGCTATTTCTGGTGTCCAGACTGTCCGTTTTAAAAATGAATTGGAGCGT
AACATTACCATTAAGCTTGGATATGCAAACGCCAAGATTTACAAATGTGAGGATGAGAAATGCCCTAGACCAATGTGCTA
CAAGGCCTACGGAAGTGGAAAGGAAGACACTCCCAATTGTGATGTCCCCGGATTTGAAAACTCCAAGATGAAACTATTGA
GGCATGTCTCATTCGTTGATTGCCCGGGTCACGATATTCTCATGGCAACAATGCTTAATGGAGCAGCCATCATGGATGGT
GCACTACTTTTAATCGCTGCAAATGAAACTTGTCCACAACCACAAACGTCTGAACATCTTGCTGCCGTTGAGATTATGCA
ACTTAAGCATATCATCATCCTTCAGAACAAGATTGATCTTATTCAAGAGAATGTTGCCATTAATCAGCACGAGGCAATTC
AGAAATTTATAATGAACACTGTTGCTGATGCTGCTCCGATCGTCCCTGTCTCAGCACAACTGAAATACAACATTGATGTG
GTGTGCGAGTACATTGTCAAGAAGATCCCAATCCCTGAGAGGAATTTTGTGTCACCCCCAAATATGATAGTGATTCGGTC
TTTTGATGTCAACAAACCTGGTTATGAGGTTGATGAGATCAAAGGTGGAGTTGCAGGTGGAAGTATCCTACGGGGTGTTT
TGAGAGTCAACCAATTAATCGAAATCCGACCTGGTATCGTTACCAAAGACGAGCGTGGCAACTCAAAATGCACTCCAATT
TACTCTCGCATCATTTCACTCTACGCGGAACAGAACGAGCTTCAGTTTGCTGTTCCTGGAGGTCTAATAGGAGTTGGAAC
AACAATGGACCCAACTCTCACTCGTGCAGATCGATTAGTTGGTCAAGTCCTTGGTGAAATCGGTTCACTTCCTGATGTAT
TTGTTGAACTCGAGGTGAACTTCTTTCTTCTACGACGTTTGTTGGGAGTGAGAACAAAGGGATCAGAGAAACAAGGGAAA
GTGTCAAAGCTAACGAAAGGAGAGATTCTGATGCTCAACATTGGTTCGATGTCCACTGGAGCCAAAGTTGTAGGAGTTAA
AGTCGATCTGGCTAAACTGCAACTGACTGCGCCTGTTTGTACCAGCAAAGGAGAGAAAGTGGCTCTAAGCAGACGTGTGG
AAAAGCATTGGCGTTTGATTGGTTGGGGTCAGATTCAAGCTGGAACCACCATCGAAGTTCCTCCTTCACCTTTCTAAGCT
ATGTGTTATTTTTGTCCTTTTTGTTTGTGTTTCTGAAAAAAAGATTGTTAAACCCCTCAAAAAGATAATAAAACTCTTTT
TCTCGTTGGGGGATTTTGGAGAGTTCGTCTTTGCGGATTAAACATCTTCAAACAGTACCTGATTTGTTATTGTTACTAGT
TTGCTCTTTGTTATTGTTACTAGTTTGCTCTTTGTTTGTGTTTTTCTCTTAGATATTACTAAATTTTGTTGTCTCTCTTT
TTTTTTTTGAAATTTTTGTCAGAGATACTCTGCTACTTGACTATACATACTTTCTTCAGAAAAGGAACAACTTCATTACC
C
1=============================Open Reading Frames===========================1921

 =========                                   ======                               +1
         ===========================================================              +2
              ==========   ======                                                 +3
                    =====                                                         -3
         =====          ======                   ======                           -2
                                                                                  -1
         ===========================================================              ESTScan(+)
                                                                                  
         ===========================================================              framefinder(+)
________________________________________________________________________________

1===================================TC303691================================1921
      1a       >                            37    >  <       41       
.....................................................<       1b       
                                  2                                  >
        3       >                           <           38            
                4              >               <           39           
           5         >                             <          40           
           6         >                               <        42         
          7       >                                   <        43        
          8       >                                   <        44        
          9       >                                   <        45         
           10         >                               <        46        
           11        >                                 <       47        
                   12               >                  <       48        
                                      13                                  >
            14        >                                 <       49       
         15     >                                       <      50       
           16a       >                                  <       51       
    ..............................................          16b           >
                                      17                                  >
          18       >                                     <       52       
          19      >                                      <       53       
          20       >                                     <       54       
                 21             >                        <       55       
          22      >                                      <       56       
                                   23                                >
       24    >                                           <        57        
          25      >                                      <       58        
                 26            >                         <       59       
               27          >                             <        60         
           28       >                                     <       61       
            29        >                                   <       62       
                   30              >                      <       63       
           31       >                                      <      64      
            32       >                                      <      65      
                                    33                            >  < 70  
                                     34                             >
             35     >                                       <       66       
                  36      >                                  <        67        
                                                               <       68       
                                                               <     69      

                                                                                                                                                             
 #  Src  EST Id              GB#           Clone/Protein   left  right Library/Protein name
                                                                                                                                                             
 1a I024 AV826560            AV826560      RAFL08-17-O08       1   392 RAFL8
 1b I024 AV795506            AV795506      RAFL08-17-O08    1268  1682 RAFL8
 2  ETG  NP457709            AY092973      AAM12972            2  1682 strong similarity to initiation factor eIF-2, gb|U37354 from S [Arabidopsis thaliana]
 3  I024 BP804761            BP804761      RAFL24-03-C14      15   398 RAFL16
 4  I024 BP796084            BP796084      RAFL03-08-A14      39   758 RAFL3
 5  I034 971272              DR260167      206784             76   539 CERES-148
 6  I034 4498019             DR260171      1009563            76   536 CERES-148
 7  I024 BP801306            BP801306      RAFL23-19-E12      77   448 RAFL14
 8  I024 BP801913            BP801913      RAFL23-21-O18      77   448 RAFL14
 9  I024 BP802809            BP802809      RAFL23-26-G23      77   454 RAFL14
10  I034 153919              DR260168      120997             78   562 CERES-148
11  I034 963477              DR260172      155030             78   534 CERES-148
12  I02E AJ609353            AJ609353      a209A11            85   882 Arabidopsis thaliana aerial vegetative tissues 4-weeks old
13  I023 Ceres:37699                       Ceres:37699        85  1793 full-length cDNA from Ceres, Inc.
14  I034 1131229             DR260164      253201             85   561 CERES-148
15  I034 39182               DR260166      4386               85   404 CERES-148
16a I034 71849               DR260169      37699              85   517 CERES-148
16b I034 107917              DR376038      37699            1212  1793 CERES-148
17  ETG  NP505929            AY087689      AAM65226           85  1793 putative translation initiation factor eIF-2, gamma subunit [Arabidopsis thaliana]
18  I024 BP807245            BP807245      RAFL24-13-A05      86   478 RAFL16
19  I024 BP814705            BP814705      RAFL22-36-J05      86   468 RAFL19
20  I024 BP819972            BP819972      RAFL22-53-A14      86   479 RAFL19
21  I024 BP796050            BP796050      RAFL03-06-N01      87   792 RAFL3
22  I024 BP825651            BP825651      RAFL22-69-E17      90   466 RAFL19
23  ETG  NP335295            AF353097      AAK29674           92  1684 protein synthesis initiation factor eIF2 gamma [Arabidopsis thaliana]
24  I008 18511               N37284        208N11T7           99   345 Lambda-PRL2
25  I024 BP829804            BP829804      RAFL22-83-E02     106   455 RAFL19
26  I02A 94-E010696-019-002  CB253610      MPIZp768K232Q     111   761 MPIZ-ADIS-019
27  I02A 72-E018429-019-008  CB254325      MPIZp768P178Q     111   663 MPIZ-ADIS-019
28  I024 BP797627            BP797627      RAFL23-04-B10     122   497 RAFL14
29  I008 21003               N96424        F1F2T7            123   555 CD4-14
30  I034 12823754            DR260170      1359516           131   858 CERES-AN65
31  I008 18756               N37529        214F17T7          131   516 Lambda-PRL2
32  I024 BP863754            BP863754      RAFL21-67-O11     139   536 RAFL21
33  ETG  NP041959            AC002411      AAC16745          200  1597 Strong similarity to initiation factor eIF-2, gb|U37354 from S. pombe.  ESTs gb|T41979, gb|N37284 and gb|N37529 come from this gene.
34  ETG  NP629125            BT002095      AAN72106          200  1664 strong similarity to initiation factor eIF-2, gb|U37354 from S [Arabidopsis thaliana]
35  I008 5242                T41979        109O19T7          221   511 Lambda-PRL2
36  I008 M13C4STM            BE520534      M13C4             315   658 Arabidopsis developing seed
37  I008 M63M13STM           BE525667      600034155R1       960  1214 Arabidopsis developing seed
38  I002 701550931           AI996270      701550931        1067  1671 A. thaliana, Columbia Col-0, inflorescence-2
39  I006 AV531253            AV531253      FB018c02F        1122  1733 Arabidopsis thaliana flower buds Columbia
40  I006 AV541556            AV541556      RZ168d09F        1216  1778 Arabidopsis thaliana roots Columbia
41  I024 BP593942            BP593942      RAFL15-24-A12    1264  1684 RAFL15
42  I024 BP571413            BP571413      RAFL14-76-D12    1283  1748 RAFL14
43  I024 BP619004            BP619004      RAFL16-30-K05    1302  1751 RAFL16
44  I024 BP572932            BP572932      RAFL14-82-B18    1303  1748 RAFL14
45  I024 BP614757            BP614757      RAFL16-98-F23    1304  1788 RAFL16
46  I024 BP579333            BP579333      RAFL14-22-C04    1307  1746 RAFL14
47  I024 BP576146            BP576146      RAFL14-15-M03    1316  1748 RAFL14
48  I024 BP569392            BP569392      RAFL14-66-M19    1328  1748 RAFL14
49  I024 BP574481            BP574481      RAFL14-88-D19    1334  1748 RAFL14
50  I006 AV518810            AV518810      APD41b09F        1338  1730 Arabidopsis thaliana aboveground organs two to six-week old
51  I024 BP575421            BP575421      RAFL14-12-G03    1340  1748 RAFL14
52  I024 BP615735            BP615735      RAFL16-17-B05    1357  1788 RAFL16
53  I024 BP619905            BP619905      RAFL16-35-A07    1357  1788 RAFL16
54  I024 BP625120            BP625120      RAFL17-42-K22    1360  1788 RAFL17
55  I024 BP625529            BP625529      RAFL17-44-C09    1360  1788 RAFL17
56  I024 BP621608            BP621608      RAFL16-42-F02    1363  1788 RAFL16
57  I024 BP584834            BP584834      RAFL14-48-B03    1371  1820 RAFL14
58  I024 BP584399            BP584399      RAFL14-46-C07    1373  1802 RAFL14
59  I024 BP786201            BP786201      RAFL07-98-D06    1373  1788 RAFL7
60  I024 BP576170            BP576170      RAFL14-15-N22    1380  1837 RAFL14
61  I024 BP784020            BP784020      RAFL07-89-A22    1383  1790 RAFL7
62  I024 AV803500            AV803500      RAFL09-35-M03    1394  1790 RAFL9
63  I024 BP655468            BP655468      RAFL19-21-J11    1402  1790 RAFL19
64  I024 BP630287            BP630287      RAFL17-19-I24    1428  1788 RAFL17
65  I024 BP649478            BP649478      RAFL19-13-M11    1429  1790 RAFL19
66  I024 BP573949            BP573949      RAFL14-86-D13    1442  1837 RAFL14
67  I024 BP566612            BP566612      RAFL14-54-J24    1470  1921 RAFL14
68  I024 BP576223            BP576223      RAFL14-91-D21    1519  1921 RAFL14
69  I024 BP573101            BP573101      RAFL14-82-P03    1524  1837 RAFL14
70  I006 AV441471            AV441471      APZ58b06_f       1660  1793 Arabidopsis thaliana above-ground organ two to six-week old



Sequence source codes:

I02E URGV  CNRS / INRA,  
I006 Kazusa DNA Research Institute, The First Laboratory for Plant Gene Research
I023 Inc., Ceres
I02A Max Planck Institute for Plant Breeding Research, ADIS DNA core facility at MPIZ
I002 Genome Systems  Inc.  a wholly owned subsidiary of Incyte Pharmaceuticals  Inc.,  
I008 Michigan State University, Dept. of Biochemistry & Molecular Biology
I034 Ceres  Inc, 
I024 RIKEN Genomic Sciences Center, Plant Functional Genomics Research Group
ETGB Expressed Transcripts from GenBank

TC sequence strand: coding strand

Evidence for coding strandEvidence for reverse complement Inconclusive evidence
ESTs5' ESTs (used as +) 25 (used as -) - (5'/3' source not known)
3' ESTs (used as -) 33 (used as +) 1
total58 1 8
Expressed transcripts4 -  
Predicted genes1 -
Protein hits4 -
Trimmed polyA/T1 -

Tentative Annotation:
RF|NP_171913.1|15219669|NM_100298 EIF2 GAMMA; translation factor, nucleic acid binding {Arabidopsis thaliana} (exp=-1; wgp=0; cg=0), complete 0

GO annotation

GO idGO termEC#TypeGOpep link%sim%cov
GO:0003743translation initiation factor activity-MTAIR|gene:2141856 9199
GO:0008135translation factor activity, nucleic acid binding-MTAIR|gene:2053971 9098
GO:0005525GTP binding-MGeneDB_Pfalciparum|PF14_0104 8494
GO:0005850eukaryotic translation initiation factor 2 complex-CGeneDB_Pfalciparum|PF14_0104 8494
GO:0006413translational initiation-BTAIR|gene:2141856 9199

Referenced by :
Tentative Ortholog Group 966379 (general group)
Tentative Ortholog Group 966912 (general group)
Tentative Ortholog Group 970465 (general group)
Maps to :
GenomeChromosomeEnd5End3ScoreShow genomic alignment with:
Arabidopsis genome chr1 1,096,945 1,100,025 1885    
Rice genome chr12 3,884,579 3,887,159 219    
Fission yeast genome chr2 2,108,082 2,109,993 132    
Rhesus macaque genome chr5 104,855,015 104,856,932 110

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Acknowledgements
   The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.