The DFCI Arabidopsis thaliana Gene Index (AtGI)
AtGI TC Report:
EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. 

>TC280687 TC139420 TC163380 TC173670
CTTCTCTAGCGTCACTCTTCTTCTTCATTGGTCGGTAGAATAAGGCCAAGGAAGGGATCAGTTTTAAGTTTTGTTTCATT
CTTTTTGTAGTGGAGAAAAAGAGTTTTTGAAAATCAAAACAACAAAAAATGCCGATTAGGCAAATGAAAGATAGCTCTGA
GACTCACTTAGTTATCAAAACCCAACCTTTAAAGCACCACAATCCAAAAACCGTTCAAAACGGTAAAATCCCTCCTCCTT
CTCCTTCTCCGGTGACGGTGACTACTCCGGCGACGGTTACTCAGAGTCAAGCTTCTTCACCTTCACCACCGTCAAAGAAT
CGTAGCCGGAGGAGAAACCGTGGTGGAAGAAAATCTGATCAAGGAGATGTTTGTATGAGACCTAGCTCTCGTCCTCGTAA
ACCGCCACCGCCAAGTCAAACCACTTCCTCCGCCGTCTCCGTCGCCACCGCCGGTGAGATTGTCGCTGTGAATCATCAGA
TGCAGATGGGTGTTCGTAAAAACTCAAACTTTGCTCCAAGACCTGGATTTGGAACACTTGGAACTAAATGCATTGTTAAA
GCTAACCACTTTCTCGCTGATTTGCCTACCAAGGATTTGAATCAGTATGATGTTACAATTACTCCTGAAGTGTCATCAAA
GAGTGTTAACAGAGCTATAATTGCTGAGTTAGTTAGACTTTACAAAGAGTCTGATCTCGGGAGGAGACTTCCGGCTTACG
ATGGCCGGAAAAGTCTTTACACTGCTGGAGAACTTCCTTTTACTTGGAAGGAGTTCAGTGTTAAGATTGTTGATGAAGAT
GACGGTATCATCAATGGCCCTAAAAGGGAGAGATCATATAAGGTGGCAATCAAGTTTGTTGCACGGGCAAATATGCATCA
CTTAGGCGAGTTTCTAGCTGGTAAACGGGCAGATTGTCCGCAAGAGGCGGTGCAGATTCTTGATATTGTACTCAGGGAGT
TGTCGGTTAAGAGGTTTTGTCCCGTTGGAAGATCTTTCTTTTCGCCTGATATTAAAACACCGCAGCGACTCGGTGAAGGG
TTAGAGTCATGGTGTGGGTTTTACCAGAGTATTAGACCAACTCAAATGGGTTTATCACTAAATATCGATATGGCTTCAGC
TGCATTCATCGAGCCTCTTCCAGTGATAGAGTTTGTAGCACAGCTTCTTGGAAAGGATGTCTTGTCGAAGCCATTGTCGG
ATTCTGATCGCGTCAAGATTAAGAAGGGTCTTAGAGGAGTGAAAGTAGAGGTTACTCACAGAGCGAATGTAAGAAGGAAA
TACCGTGTTGCGGGTTTAACAACTCAACCAACAAGAGAGCTAATGTTTCCAGTAGATGAGAACTGTACTATGAAGTCAGT
TATTGAGTATTTCCAAGAGATGTATGGATTCACGATCCAGCACACGCATTTGCCATGTCTCCAAGTTGGAAACCAAAAGA
AGGCAAGCTATTTGCCGATGGAGGCATGCAAAATTGTCGAGGGACAACGGTACACGAAAAGGTTGAATGAGAAGCAGATT
ACTGCTCTCTTGAAAGTTACATGCCAAAGGCCGAGGGACAGAGAAAACGATATTTTGCGGACTGTCCAACACAACGCATA
TGATCAAGATCCATATGCAAAGGAGTTTGGCATGAACATAAGCGAAAAGTTAGCTTCTGTTGAAGCTCGTATTCTTCCAG
CTCCATGGCTTAAGTATCACGAGAACGGGAAAGAAAAAGATTGTCTCCCGCAAGTTGGTCAGTGGAATATGATGAACAAG
AAAATGATCAACGGGATGACTGTGAGCAGATGGGCCTGTGTTAACTTCTCACGCAGCGTTCAAGAAAACGTTGCTCGTGG
ATTTTGTAATGAACTTGGTCAGATGTGTGAAGTCTCAGGCATGGAGTTTAATCCAGAACCCGTGATACCAATATATAGTG
CGAGGCCCGATCAAGTCGAGAAAGCTCTAAAGCATGTTTATCACACTTCAATGAACAAAACCAAAGGCAAAGAGTTAGAG
CTTCTGCTGGCAATATTACCTGATAACAACGGTTCACTTTATGGTGATCTTAAGAGAATCTGTGAAACCGAGCTTGGTTT
GATATCTCAATGTTGTCTCACAAAACATGTGTTCAAGATTAGCAAACAGTATCTGGCAAATGTATCCCTTAAAATCAACG
TAAAGATGGGAGGAAGGAACACAGTTCTAGTAGACGCCATAAGCTGTAGAATACCACTGGTTAGCGATATACCGACAATC
ATTTTTGGCGCAGACGTGACTCACCCAGAGAACGGGGAAGAGTCAAGCCCTTCAATCGCTGCTGTTGTTGCTTCTCAAGA
CTGGCCTGAAGTGACAAAATATGCGGGTTTAGTTTGTGCTCAAGCTCACAGGCAAGAACTTATACAAGATTTGTATAAAA
CATGGCAAGATCCTGTTCGCGGTACTGTTAGTGGCGGTATGATCAGGGACCTTCTTATCTCATTTAGAAAAGCAACAGGG
CAAAAACCGCTTCGAATTATCTTTTATCGTGATGGAGTAAGCGAAGGGCAATTCTATCAAGTTTTACTCTATGAGTTGGA
TGCAATTCGAAAGGCTTGTGCATCGCTTGAACCGAATTATCAGCCACCGGTGACATTCATAGTTGTACAGAAGCGTCACC
ACACTCGTTTGTTTGCTAATAATCACCGAGACAAAAACAGTACTGACCGAAGCGGAAATATCTTACCAGGTACTGTAGTT
GACACTAAAATATGTCATCCAACTGAATTCGACTTCTACCTTTGTAGCCATGCGGGTATTCAGGGAACAAGCAGGCCTGC
ACATTACCATGTTCTTTGGGACGAGAACAATTTCACAGCAGATGGTATTCAATCTCTGACTAACAATCTCTGTTATACCT
ATGCGCGGTGCACTCGGTCGGTCTCTATAGTTCCTCCAGCGTATTATGCTCATCTTGCAGCATTTCGAGCACGTTTCTAC
CTGGAACCGGAGATAATGCAAGACAACGGATCACCGGGTAAAAAGAACACGAAAACAACAACTGTCGGAGACGTAGGTGT
GAAGCCTTTACCAGCCTTGAAGGAGAATGTGAAGAGAGTAATGTTCTACTGCTAAAAATCCAAACATTCCTTAATCAGTT
TTAATAAGTAGTTTGGTTGTTTGCTTGTAGTTCGGCTTTAGATTTACCAATGTTTTTCTTATGTAAATTTTGTCGGTTTG
GTTTAAGCCTTTAGGAATTAGTGTATTAGGGTTTTTCTAAAGTTGTACTTTAGCTGATGATAACGTTGATGCAGTGACTT
TGTTAAAACCTCCTCTTCTACAGTAGTGTTTACGTCGGTTCCTCAAGCTTAATAATAAAAAATATATAGA

1=============================Open Reading Frames===========================3350

                  ====          ===                                               +1
                                                                                  +2
    =======================================================================       +3
                                      ===                  ==                     -3
                                                   ====                           -2
        ====                                                    =====             -1
    =======================================================================       ESTScan(+)
                                                                                  
    =======================================================================       framefinder(+)
________________________________________________________________________________

1===================================TC280687================================3350
                                      1                                       >
      2   >            5   >          9  >         12     >          <   17    
                                     3                                   >
                                     4                                   >
                             6    >          10       >          16     >
                             7   >      11  >     13  >                   18  >
                                      8a   >               14      >
                                    ....................................<  8b   
                                                           15    >

                                                                                                                                                             
 #  Src  EST Id              GB#           Clone/Protein   left  right Library/Protein name
                                                                                                                                                             
 1  ETG  NP030673            AJ223508      CAA11429            1  3324 Zwille protein
 2  I006 AV548910            AV548910      RZL64f01F         105   476 Arabidopsis thaliana roots Columbia
 3  ETG  NP034511            AF154272      AAD40098          129  3095 PINHEAD
 4  ETG  NP236643            AB026651      BAB11310          129  3095 PINHEAD
 5  I008 M33C1STM            BE523248      M33C1             846  1170 Arabidopsis developing seed
 6  I008 M25A9STM            BE522316      M25A9            1040  1457 Arabidopsis developing seed
 7  I008 M25A10STM           BE522302      M25A10           1068  1419 Arabidopsis developing seed
 8a I008 M31A10STM           BE522977      M31A10           1502  1859 Arabidopsis developing seed
 8b I008 M31A10XTM           BE522978      M31A10           3005  3350 Arabidopsis developing seed
 9  I008 M64B21STM           BE526264      600034881R1      1522  1750 Arabidopsis developing seed
10  I034 12847201            DR368570      1368295          1633  2313 CERES-AN65
11  I00E ATTS0460            Z17976        TASG012          1650  1889 AC16H
12  I02D 216l20.p1           CK118552      MPMGp2011L2021   1981  2480 AtM1
13  I008 M78I15STM           BE530614      600040161R1      2032  2285 Arabidopsis developing seed
14  I025 014A08AF            CA781259                       2282  2838 Infected Arabidopsis Leaf
15  I02B 35F4                CD534067                       2352  2771 Arabidopsis Leaf Senescence Library
16  I02A 67-E009520-012-003  CB260762      MPIZp769F213Q    2515  3046 MPIZ-ADIS-012
17  I006 AV555962            AV555962      SQ031c10F        2893  3324 Arabidopsis thaliana green siliques Columbia
18  I008 29369               AA597737      222I9T7          3010  3324 Lambda-PRL2



Sequence source codes:

I025 Aalborg Universitet, Institut for bioteknologi
I00E Laboratoire de Biologie Moleculaire des Plantes   CNRS, Gigot Claude / L512
I008 Michigan State University, Dept. of Biochemistry & Molecular Biology
I006 Kazusa DNA Research Institute, The First Laboratory for Plant Gene Research
I034 Ceres  Inc, 
I02D Max Planck lnstitute for Molecular Genetics, Plant Protein Chip Group, Department Lehrach
I02B Cornell University, Department of Horticulture
I02A Max Planck Institute for Plant Breeding Research, ADIS DNA core facility at MPIZ
ETGB Expressed Transcripts from GenBank

TC sequence strand: coding strand

Evidence for coding strandEvidence for reverse complement Inconclusive evidence
ESTs5' ESTs (used as +) 8 (used as -) - (5'/3' source not known)
3' ESTs (used as -) 2 (used as +) 2
total10 2 4
Expressed transcripts2 -  
Predicted genes1 -
Protein hits4 -
Trimmed polyA/T- -

Tentative Annotation:
UP|PINH_ARATH (Q9XGW1) PINHEAD protein (ZWILLE protein), complete 0

GO annotation

GO idGO termEC#TypeGOpep link%sim%cov
GO:0035197siRNA binding-MTAIR|gene:3353432 8877
GO:0004521endoribonuclease activity-MTAIR|gene:3353432 8877
GO:0003743translation initiation factor activity-MTAIR|gene:1945471100100
GO:0035198miRNA binding-MTAIR|gene:3353432 8877
GO:0005737cytoplasm-CTAIR|gene:3353432 8877
GO:0009733response to auxin stimulus-BTAIR|gene:3353432 8877
GO:0009965leaf morphogenesis-BTAIR|gene:3353432 8877
GO:0009850auxin metabolism-BTAIR|gene:3353432 8877
GO:0016441posttranscriptional gene silencing-BTAIR|gene:3353432 8877
GO:0010218response to far red light-BTAIR|gene:3353432 8877
GO:0035195miRNA-mediated gene silencing-BTAIR|gene:3353432 8877
GO:0009793embryonic development (sensu Magnoliophyta)-BTAIR|gene:3353432 8877

Referenced by :
Tentative Ortholog Group 1010607 (general group)
Tentative Ortholog Group 1039494 (general group)
Tentative Ortholog Group 1096369 (general group)
Maps to :
GenomeChromosomeEnd5End3ScoreShow genomic alignment with:
Arabidopsis genome chr5 17,628,199 17,634,044 3249    
Rice genome chr2 27,275,567 27,280,079 89    

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Acknowledgements
   The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.