The Gene Index Project

**The DFCI Arabidopsis thaliana Gene Index (AtGI)**

AtGI TC Report:

EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions.

>TC291417 TC139926 TC164734 TC174552
ACGAGAGGAAGTACATTAGTTTGGAGAAGAGTAATAGACAGAGAGATAGAGAGAAAGAGAAGCAGTTCGGAGAAACAATG
GCGGTAGAAGACACTCCCAAATCTGTTGTAACGGAAGAAGCTAAGCCTAATTCAATAGAGAATCCGATTGATCGATACCA
TGAGGAAGGTGATGATGCCGAAGAAGGAGAGATCGCCGGAGGAGAAGGAGACGGAAACGTTGACGAATCGAGCAAATCCG
GTGTTCCTGAATCGCATCCTCTGGAACATTCATGGACTTTCTGGTTCGATAATCCTGCTGTGAAATCGAAACAAACCTCT
TGGGGAAGTTCCTTGCGACCCGTGTTTACGTTTTCAACTGTTGAGGAATTTTGGAGTTTGTACAACAACATGAAGCATCC
GAGCAAGTTAGCTCACGGAGCTGACTTCTACTGTTTCAAACACATCATTGAACCTAAGTGGGAGGATCCTATTTGTGCTA
ATGGAGGAAAATGGACTATGACTTTCCCTAAGGAGAAGTCTGATAAGAGCTGGCTCTACACTTTGCTTGCATTGATTGGA
GAGCAGTTTGATCATGGAGATGAAATATGTGGAGCAGTTGTCAACATTAGAGGAAAGCAAGAAAGGATATCTATTTGGAC
TAAAAATGCTTCAAACGAAGCTGCTCAGGTGAGCATTGGAAAACAATGGAAGGAGTTTCTCGATTACAACAACAGCATAG
GTTTCATCATCCATGAGGATGCGAAGAAGCTCGACAGGAATGCAAAGAACGCTTACACCGCTTGAAACCTCTCAAATCTT
TGCATTGTTTCAATTACAGTTTTGTATGTGAGAGATCTCTATTTATCTAAACATGACTTGACAGTCTGTCTTTGCTAGTG
TTGATTGTTCACGAAGCTCTAACATTTCATTTAGTAATATATTAGTATGGTTCTTCATAATA

1=============================Open Reading Frames============================942

               ============                                                       +1
                                                                                  +2
        ============================================================              +3
 =================================                                                -3
            ============          ==============                                  -2
            ============                                                          -1
 ===================================================================              ESTScan(+)
                                                                                  
 ==================================================================               framefinder(+)
________________________________________________________________________________

1===================================TC291417=================================942
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    .........................                       10b                        >
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                           <                       33                       
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 #  Src  EST Id              GB#           Clone/Protein   left  right Library/Protein name
                                                                                                                                                             
 1  I034 4526286             DR219594      1030026             1   451 CERES-149
 2  I034 4494685             DR219596      1006324             1   470 CERES-149
 3  I034 4497200             DR219598      1008744             1   436 CERES-149
 4  I034 12838563            DR219592      1365579            38   574 CERES-AN65
 5  I023 Ceres:25447                       Ceres:25447        43   936 full-length cDNA from Ceres, Inc.
 6  I034 12841599            DR219584      1366525            43   776 CERES-AN65
 7  I034 4524434             DR219586      1029325            43   510 CERES-149
 8  I034 11060678            DR219591      1340263            43   492 CERES-AN65
 9  I034 4494340             DR219593      1005979            43   477 CERES-149
10a I034 59828               DR219595      25447              43   523 CERES-149
10b I034 991651              DR373955      25447             341   937 CERES-149
11  ETG  NP486413            AY086496      AAM63497           43   936 translation initiation factor eIF4E [Arabidopsis thaliana]
12  I034 34590               DR219589      42860              44   617 CERES-130
13a I024 BP560702            BP560702      RAFL04-20-N07      45   636 RAFL4
13b I024 AV782722            AV782722      RAFL04-20-N07     819   936 RAFL4
14  ETG  NP858916            AB107250      BAC98353           45   942 eukaryotic translation initiation factor 4E [Arabidopsis thaliana]
15  I034 111010              DR219588      91702              46   457 CERES-147
16  I034 50702               DR219590      16094              46   521 CERES-147
17  ETG  NP367009            AF389286      AAK63858           46   937 AT4g18040/F15J5_10 [Arabidopsis thaliana]
18  I024 BP814362            BP814362      RAFL22-35-H03      48   420 RAFL19
19  I024 BP854871            BP854871      RAFL25-24-L17      48   436 RAFL21
20  I034 138505              DR219585      106534             48   545 CERES-149
21  I034 4254079             DR219599      1003847            48   455 CERES-149
22  I024 BP865973            BP865973      RAFL21-76-C02      50   441 RAFL21
23  I034 12835670            DR219597      1364676            59   585 CERES-AN65
24a I02A 42-E012997-019-004  CB255432      MPIZp768C114Q      61   455 MPIZ-ADIS-019
24b I02A 42-E012992-019-004  CB255428      MPIZp768C114Q     537   938 MPIZ-ADIS-019
25  ETG  NP031054            Y10548        CAA71580           62   938 eIF4E protein
26  I034 11065693            DR219583      1345278            64   663 CERES-AN65
27  I034 65295               DR219587      31029              65   392 CERES-148
28  ETG  NP032035            AL110123      CAB53645           78   785 translation initiation factor eIF4E
29  ETG  NP189249            AL161547      CAB78806           78   785 translation initiation factor eIF4E
30  ETG  NP449248            AY093750      AAM10374           78   785 AT4g18040/F15J5_10 [Arabidopsis thaliana]
31  I034 4526057             DR219582      1029797            83   519 CERES-149
32  I025 051B10              BU636380                        139   841 Infected Arabidopsis Leaf
33  I002 701549090           AI995896      701549090         318   892 A. thaliana, Columbia Col-0, inflorescence-2
34  I02A 31-E8864-008-010-N  CB263187      MPIZp767N0810Q    322   911 MPIZ-ADIS-008
35  I024 BP575661            BP575661      RAFL14-13-H23     499   912 RAFL14
36  I024 BP636424            BP636424      RAFL18-04-H19     504   936 RAFL18
37  I024 BP664277            BP664277      RAFL21-11-K21     507   936 RAFL21
38  I024 BP625456            BP625456      RAFL17-43-O03     523   936 RAFL17
39  I024 AV790703            AV790703      RAFL06-89-N14     534   936 RAFL6
40  I024 BP663779            BP663779      RAFL21-49-H19     538   936 RAFL21
41  I024 BP632186            BP632186      RAFL17-26-D21     579   936 RAFL17
42  I024 BP631430            BP631430      RAFL17-23-H24     589   936 RAFL17
43  I008 28760               AA586111      74B8XP            612   941 Lambda-PRL2



Sequence source codes:

I025 Aalborg Universitet, Institut for bioteknologi
I002 Genome Systems  Inc.  a wholly owned subsidiary of Incyte Pharmaceuticals  Inc.,  
I008 Michigan State University, Dept. of Biochemistry & Molecular Biology
I034 Ceres  Inc, 
I023 Inc., Ceres
I024 RIKEN Genomic Sciences Center, Plant Functional Genomics Research Group
I02A Max Planck Institute for Plant Breeding Research, ADIS DNA core facility at MPIZ
ETGB Expressed Transcripts from GenBank

TC sequence strand: coding strand

		Evidence for coding strand		Evidence for reverse complement		Inconclusive evidence
ESTs	5' ESTs	(used as +)	22	(used as -)	-	(5'/3' source not known)
	3' ESTs	(used as -)	9	(used as +)	2	(5'/3' source not known)
	total	31		2		6
Expressed transcripts		5		-
Predicted genes		2		-
Protein hits		4		-
Trimmed polyA/T		1		-

Tentative Annotation:
UP|IF4E1_ARATH (O23252) Eukaryotic translation initiation factor 4E-1 (eIF4E-1) (eIF-4E-1) (mRNA cap-binding protein) (eIF-4F 25 kDa subunit) (eIF-4F p26 subunit), complete 0

GO annotation

GO id	GO term	EC#	Type	GOpep link	%sim	%cov
GO:0003723	RNA binding	-	M	TIGR_Ath1\|At1g29590	84	57
GO:0003743	translation initiation factor activity	-	M	TIGR_Ath1\|At1g29590	84	57
GO:0005634	nucleus	-	C	TAIR\|gene:2117646	100	100
GO:0005730	nucleolus	-	C	TAIR\|gene:2117646	100	100
GO:0005737	cytoplasm	-	C	TIGR_Ath1\|At1g29590	84	57
GO:0006413	translational initiation	-	B	TIGR_Ath1\|At1g29590	84	57

Referenced by :

Tentative Ortholog Group 1169664 (general group)

Tentative Ortholog Group 976428 (general group)

Maps to :

Genome	Chromosome	End5	End3	Score	Show genomic alignment with:
Arabidopsis genome	chr4	10,016,579	10,018,240	925
Rice genome	chr1	42,793,188	42,794,129	63

Comments and suggestions : Contact Us

Acknowledgements
	The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.

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GCOD

Resourcerer

Gene Indices

Genomic Maps

EGO

**The DFCI Arabidopsis thaliana Gene Index (AtGI)**

AtGI TC Report:

EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions.

TC sequence strand: coding strand

Home

GCOD

Resourcerer

Gene Indices

Genomic Maps

EGO

The DFCI Arabidopsis thaliana Gene Index (AtGI) AtGI TC Report: EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions.

TC sequence strand: coding strand

**The DFCI Arabidopsis thaliana Gene Index (AtGI)**

AtGI TC Report:

EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions.