The DFCI Arabidopsis thaliana Gene Index (AtGI)
AtGI TC Report:
EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. 

>TC301085 TC47374 TC53732 TC64207 TC72549 TC95543 TC140418 TC165302 TC175536
GATATCTAAATCTGAGAAAAATGGCGATTGATACGATACAAAAAACAAAAAAGCTTCGGTGGGGAGAAATTGACGAAGAA
GAAGGCGACTATGATTTCCTTCTTCCGCCTAAGCAGATGATTAGTCCGGACCAGAACGGTGTAAAGAAGGTGATTGAGTA
CAAATTCAACGAAGAGGACAAAAAGGTCAAAATCACTACCACGACCCGTGTTCAGAAGCGAGCTCTCACCAAACAAGCCG
TGGAGCGACGGAGCTGGAATAAGTTCGGAGACGCAGCTCATGAAGAATCCAGTAGTTACCTCACAATGCGTTCAACAGAG
GATATCATCTTGGAACGAATTAGAGCTCCTGGTAGCAACGCGGAACAGTCGACCGTATCAGGAGATAGCATGTCTCAGTT
GGGCAAACCGGGTGCGGTCCTCATGGTCTGCAGGTTATGCCAAAAGAAAGGTGACCACTGGACATCAAGATGCCCACAGA
AGGATCTCTTATCCTTAATGGACGAGCCTTTAACAGCAGAAACTTCTACATCGACCATAACTGGAACTGGCAGGGCGGCT
TATGTCCCGCCAAGCATGAGAGAAGGTGCAGACAGAAAAGCTGGTGGTTCAGACATGAGGAGTAGACATGATGAGAACTC
TGTCCGTGTGACTAATTTGTCTGAAGATACCCGTGGACCAGATTTGATGGAGTTGTTTCGTCCGTTTGGTGCTGTAACCC
GTTGTCATGTAGCCATTGATCAGAAGACAAGCATGAGCAGAGGATTTGGTTTTGTCAGTTTTGTGAGCAGGGAAGATGCA
CAGCGAGCAATCAACAAATTGAATGGCTATGGTTATGATAACCTCATTCTTAGGGTTGAATGGTCCACTCCTAAAACCCA
ATTAGATCCGTTTTCATTCGCTGATTATAATAATCTTTGTAAGTTGTTGAATATATGTCATTCATGATTATAAGTTCTCG
CGATACATAGTAATTCATGTTGGGGTCTCGTATGCAAGTTCCTACTAAATGTATTTCGGTTGAATACGTGCAAAAAAAGT
AATAAAACTCTCTTTATT

1=============================Open Reading Frames===========================1058

                      =================                                           +1
                                     ===========                                  +2
   ======================================================================         +3
                                                                   ========       -3
                               ===========                                        -2
 =====================                       =========                            -1
   ===============================================================                ESTScan(+)
                                                                                  
   ======================================================================         framefinder(+)
________________________________________________________________________________

1===================================TC301085================================1058
                     1                     >
                                    2                                  >
                  3a                >   <                   9                   
  ........................................<             3b              
                                    4                                   >
                        5                    >
             6          >                               10                 >
             7         >
                                        8                               >

                                                                                                                                                             
 #  Src  EST Id              GB#           Clone/Protein   left  right Library/Protein name
                                                                                                                                                             
 1  I034 3726763             DR355408      802500              1   579 CERES-AU1
 2  ETG  NP236989            AB017060      BAB10805           21   947 eukaryotic translation initiation factor 3 subunit-like protein
 3a I024 AV829350            AV829350      RAFL09-44-B08      23   487 RAFL9
 3b I024 AV805745            AV805745      RAFL09-44-B08     562   948 RAFL9
 4  ETG  NP427519            AY072407      AAL62399           23   962 eukaryotic translation initiation factor 3 subunit-like protein [Arabidopsis thaliana]
 5  I002 701557661           AI992415      701557661          56   603 A. thaliana, Ohio State clone set
 6  I008 17565               H77134        203P1T7            56   337 Lambda-PRL2
 7  I008 25877               AA395889      302G2T7            62   321 Lambda-PRL2
 8  ETG  NP629157            BT002127      AAN72138          117   963 eukaryotic translation initiation factor 3 subunit-like protein [Arabidopsis thaliana]
 9  I006 AV563206            AV563206      SQ183b06F         528  1058 Arabidopsis thaliana green siliques Columbia
10  I027 AG_FSL_16C03        CF773373      16C03             528  1006 Arabidopsis ag-1 35S:AG-GR forward subtraction library



Sequence source codes:

I027 The Pennsylvania State University, Biology Department and Biotechnology Institute
I006 Kazusa DNA Research Institute, The First Laboratory for Plant Gene Research
I002 Genome Systems  Inc.  a wholly owned subsidiary of Incyte Pharmaceuticals  Inc.,  
I008 Michigan State University, Dept. of Biochemistry & Molecular Biology
I034 Ceres  Inc, 
I024 RIKEN Genomic Sciences Center, Plant Functional Genomics Research Group
ETGB Expressed Transcripts from GenBank

TC sequence strand: coding strand

Evidence for coding strandEvidence for reverse complement Inconclusive evidence
ESTs5' ESTs (used as +) 2 (used as -) - (5'/3' source not known)
3' ESTs (used as -) 2 (used as +) -
total4 - 4
Expressed transcripts2 -  
Predicted genes1 -
Protein hits4 -
Trimmed polyA/T- -

Tentative Annotation:
UP|Q9FI86_ARATH (Q9FI86) Eukaryotic translation initiation factor 3 subunit-like protein, complete 0

GO annotation

GO idGO termEC#TypeGOpep link%sim%cov
GO:0003723RNA binding-MTAIR|gene:2080771 8883
GO:0003743translation initiation factor activity-MTAIR|gene:2080771 8883

Referenced by :
Tentative Ortholog Group 1009728 (general group)
Tentative Ortholog Group 1050158 (general group)
Maps to :
GenomeChromosomeEnd5End3ScoreShow genomic alignment with:
Arabidopsis genome chr5 1,808,150 1,809,854 1051    

Comments and suggestions : Contact Us

Acknowledgements
   The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.