The DFCI Arabidopsis thaliana Gene Index (AtGI)
AtGI TC Report:
EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. 

>TC295972 TC144087 TC150026
GAAACAAAACTCAAAACCCTAGGCACACACTCTCTCTCTCTCTCTCTATCCTCAAAGCTTCTTCTTCCTCGATATCGATT
GAGAGAAACTTCGTTCTAAGATTCGAAATCATGGCGGCGGTTGTTGATATTGATGTCCTAACAGCTCAGTTAGGGATTAA
TTGGTCAGATGTTAATCTCGATTCAATCCAACTTCCTCCTGGAAACGACTTTGGGATCGAAAGTGATGATGAAAGTGTTT
ACCAAGATGACCAGTCAGAATTCGACACTGGATTCGGTAACATTATCGTTGTCGATCACCTCCCTGTTGTTCCCAAGGAG
AAGTTTGAGAAACTAGAAGGTGTTGTTAAGAAAATTTACAACCAGTTAGGTGTGATTAAGGAAAATGGACTGTTGATGCC
CGTTGATCCCGATACTAAGATGACATTGGGCTACTGTTTTATTGAGTTCAACACTCCTCAGGAAGCACAAAACGCTAAGG
AAAAGTCTCATGGCTACAAGTTGGACAAGTCTCACATATTTGCTGTTAATATGTTCGATGATTTCGATAGGTTGATGAAT
GTGAAGGAGGAGTGGGAGCCTCCTCAAGAAAGGCCCCTATGTCCCTGGGGAAAATTTGCAGAAGTGGCTTACTGATGACA
AAGCCCGGGACCAGCTAGTCATTCGTTTTGGCCACGATACTGAAGTTTACTGGAATGATGCTAGGCAGAAGAAGCCTGAA
CCTGTTCATAAGCGTTCTTATTGGACAGAGAGTTATGTGCAGTGGTCTCCAATAGGTACATACCTTGTGACACTTCACAA
GCAGGGGGCAGCTGTTTGGGGTGGTGCTGATACATTTACGCGTCTCATGCGTTATCAGCATTCAATGGTCAAACTAGTTG
ATTTCTCGCCTGGTGAGAAATATCTTGTAACTTACCATAGCCAAGAACCAAGCAATCCGAGAGATGCAAGTAAAGTAGAG
ATTAAGGTCTTTGATGTGAGAACCGGGAGGATGATGAGAGATTTCAAGGGTAGTGCTGATGAGTTTTCAATTGGAGGACC
TGGTGGTGTTGCTGGTGCCTCTTGGCCTGTTTTCAGATGGGCTGGCGGAAAAGATGATAAATACTTTGCCAAGCTGAGCA
AAAACACTATCTCTGTCTATGAGACTGAGACTTTCAGCCTAATAGACAAGAAATCCATGAAGGTTGATAATGTTGTGGAT
ATTTGCTGGTCTCCCACTGATTCAATCCTTTCATTGTTTGTTCCTGAACAAGGTGGTGGAAACCAACCAGCCAAGGTTGC
TCTAGTCCAAATCCCGAGTAAGGTAGAGCTGAGGCAGAAGAATCTCTTCAGTGTGAGCGACTGCAAGATGTACTGGCAGA
GTAGTGGAGAGTATCTTGCTGTTAAGGTTGATCGATACACAAAAACTAAGAAGAGTACATACTCTGGATTTGAGCTTTTC
CGTATCAAAGAAAGGGATATTCCAATCGAGGTTCTTGAGCTGGATAACAAGAACGATAAGATCATTGCTTTCGCGTGGGA
GCCCAAGGGTCACAGGTTTGCTGTGATTCATGGTGACCAGCCAAGACCGGATGTTAGTTTCTACTCGATGAAGACTGCAC
AAAACACTGGAAGAGTTTCAAAGCTCGCAACTTTGAAGGCCAAACAAGCCAATGCCCTCTTCTGGTCGCCCACAGGCAAG
TACATCATTCTTGCTGGGTTAAAAGGTTTCAATGGCCAGCTTGAATTTTTCAACGTGGATGAGCTCGAGACAATGGCCAC
AGCTGAACACTTCATGGCCACAGATATCGAATGGGACCCAACTGGAAGGTACGTTGCAACCTCAGTGACAACAGTCCACG
AGATGGAGAATGGGTTCACCATATGGTCTTTCAATGGGAATATGGTTTACCGGATACTGAAGGATCATTTCTTCCAGTTG
GCTTGGCGTCCAAGACCGGCATCATTCTTGACTGCGGAGAAGGAAGAAGAGATAGCAAAGAACCTGAGGAATTACAGCAA
GAGGTATGAGGCAGAGGATCAGGACGTGTCGTTGCTATTGAGTGAACAAGACAGAGAGAAGAGGAGGGCATTGAATGAAG
AGTGGCAGAAATGGGTGATGCAGTGGAAGTCTCTGCATGAAGAGGAGAAACTCGTGAGGCAAAATCTTCGGGATGGTGAA
GTTAGTGATGTGGAAGAAGATGAGTATGAAGCCAAAGAAGTTGAGTTTGAGGATCTTATTGATGTTACTGAGGAAATTGT
TCAAGAGTTGATGTAAGTTTCTCGGTCTCTTTTGTTACCCTCTCTTAGTCTTCGATCTCTTAGATATCGCGTTCTCCACA
CTTCGAAGAGAAATTTTGTTTCCTTTGGATATTGTTTTCATTATTTAAGTTTTCGTAATTACACTTGAAGGGTTAAGATT
CTTAATACTAGACAAATCTTGCGATCA
1=============================Open Reading Frames===========================2427

       =====               ==============================================         +1
                                                         ====                     +2
     =================                                    =======                 +3
 ====                 =====                                ======                 -3
             ====                   ============= ========                        -2
                       ======            =========                                -1
     ======================================================================       ESTScan(+)
                                                                                  
 ==========================================================================       framefinder(+)
________________________________________________________________________________

1===================================TC295972================================2427
         1a         >                       <     11         <       16        
..................................................................<     1b     
  2a   >                                            12       >    <     17      
..................................................................<     2b     
     3      >                                   13   >     <        15         
 4a >                                                 14     >
............................................................       4b        >
      5       >
       6       >
       7        >
      8       >
                                      9                                       >
   10   >

                                                                                                                                                             
 #  Src  EST Id              GB#           Clone/Protein   left  right Library/Protein name
                                                                                                                                                             
 1a I024 AV826767            AV826767      RAFL09-07-A19       1   636 RAFL9
 1b I024 AV796217            AV796217      RAFL09-07-A19    2000  2409 RAFL9
 2a I024 AV829861            AV829861      RAFL09-57-F09       1   235 RAFL9
 2b I024 AV808950            AV808950      RAFL09-57-F09    2000  2409 RAFL9
 3  I024 BP818815            BP818815      RAFL22-49-E14       2   385 RAFL19
 4a I034 6645645             DR364781      1209820             2   164 CERES-AL46
 4b I034 13814099            DR383761      1209820          1831  2380 CERES-AL46
 5  I034 6627126             DR364782      1191301             2   446 CERES-AL45
 6  I034 4698888             DR364783      1111606             2   485 CERES-AB1
 7  I034 4699100             DR364784      1111780             2   526 CERES-AL6
 8  I034 5734480             DR364785      1142040             2   443 CERES-AL45
 9  ETG  NP587433            BT002393      AAO00753            2  2409 eukaryotic translation initiation factor - like protein [Arabidopsis thaliana]
10  I008 M75F14STM           BE529706      600039151R1        26   272 Arabidopsis developing seed
11  I006 AV548877            AV548877      RZL63h08F        1328  1728 Arabidopsis thaliana roots Columbia
12  I006 AV550732            AV550732      RZ116e08R        1383  1890 Arabidopsis thaliana roots Columbia
13  I008 M78E15STM           BE530612      600040159R1      1400  1653 Arabidopsis developing seed
14  I008 M57C7STM            BE524997      M57C7            1507  1882 Arabidopsis developing seed
15  I006 AV538451            AV538451      RZ116e08F        1784  2394 Arabidopsis thaliana roots Columbia
16  I006 AV518449            AV518449      APD20e11F        1847  2409 Arabidopsis thaliana aboveground organs two to six-week old
17  I024 BP788150            BP788150      RAFL07-32-G02    2009  2427 RAFL7



Sequence source codes:

I006 Kazusa DNA Research Institute, The First Laboratory for Plant Gene Research
I008 Michigan State University, Dept. of Biochemistry & Molecular Biology
I034 Ceres  Inc, 
I024 RIKEN Genomic Sciences Center, Plant Functional Genomics Research Group
ETGB Expressed Transcripts from GenBank

TC sequence strand: coding strand

Evidence for coding strandEvidence for reverse complement Inconclusive evidence
ESTs5' ESTs (used as +) 12 (used as -) - (5'/3' source not known)
3' ESTs (used as -) 6 (used as +) 1
total18 1 -
Expressed transcripts1 -  
Predicted genes- -
Protein hits3 -
Trimmed polyA/T- -

Tentative Annotation:
UP|Q8GUM1_ARATH (Q8GUM1) Eukaryotic translation initiation factor-like protein, complete 0

GO annotation

GO idGO termEC#TypeGOpep link%sim%cov
GO:0003743translation initiation factor activity-MTAIR|gene:3442820 97100
GO:0005554molecular function unknown-MTAIR|gene:3689948 8461
GO:0003676nucleic acid binding-MTAIR|gene:3442820 97100
GO:0008372cellular component unknown-CTAIR|gene:3689948 8461
GO:0000004biological process unknown-BTAIR|gene:3689948 8461

Referenced by :
Tentative Ortholog Group 1067843 (general group)
Tentative Ortholog Group 973005 (general group)
Maps to :
GenomeChromosomeEnd5End3ScoreShow genomic alignment with:
Arabidopsis genome chr5 8,973,252 8,976,869 2372    
Rice genome chr10 22,055,870 22,058,550 192    

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Acknowledgements
   The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.