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The DFCI Arabidopsis thaliana Gene Index (AtGI)
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AtGI TC Report: |
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EST IDs are linked to AtGI EST reports. ET# s are linked to
qcGene
reports. GB#s are linked to
GenBank
accessions.
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>TC283824 TC67089 TC75322 TC90551 TC145854 TC153805 TC189953 TC190673 TC203137
ATTTTTACATATAAAAAATTTCATCTTTAGGCGACGACGAGAGAATCTTTAGATTCGATTTCTCACTCGGAGCTACTTTG
AATGGGAATCTTTAGATTCGTCACTCTCAATTTCTGTCCTGCGTTTTTCAGATCTGGGGGAATCTCCGAATTTGGAATGG
GAAAATTCACAGATGTCGAAACCTTGGGGTGGAATCGGCGCATGGGCTGATGAGGCTGAGCGTGCCGATGAAGAGCAAGC
TGCTGAAGCTACAGCCACGGCGGCAGATTCACAGAGTTTCCCGAGTCTGAAAGAGGCTGCGACTGCTAAGTCTTCTAAGA
AGAAGAAGAAGATGACTTTATCGGAGTTTACCAAAGGAGCATACACTGCTCCGAGTTCTGCTGGATTGACGAGAGAGCAG
ATGCTTCAGCTACCTACTGGTCCAAGACAACGTTCTGAGGATGAAATGCAACCTGGTCGTCTCGGTGGTGGATTCTCTTC
TTATGGTGGAGGAAGGTCTAGTGGACCTCCGGGAAGAATGTCACGAGATCGAGAGGATTCTGATGGGTCTTGGGGCGGTG
GTGGTGGTGGGAGGAGATCTTATGGTGGATTTGATGATGATCAGAGGGGATCTAATTCTAGGGTTTCTGATTTCCCACAA
GTTTCTAGGGCTGATGAGGATGATGATTGGGGAAAAGGAAAGAAATCGCTTCCTTCGTTTGATCAAGGACGTCAAGGTAG
TCGTTATGGTGGTGGGGGAGGTAGTTTTGGTGGAGGAGGAGGAGGTGGTGCTGGCAGTTATGGCGGCGGTGGTGCTGGTG
CTGGTAGTGGAGGTGGAGGTGGATTCTCTAAAGCTGATGAGGTTGATAATTGGGCAGCGGGTAAAGCAAAATCATCTACG
TTTGGGTCGGGTTTCCGTGAATCCGGACCAGAGCCTGACCGATGGGCTCGAGGAGTCCTTCCTTCTGGTGGTGGGGTTCA
GGAAGAGCGACGTCGTCTTGTATTTGAACCACGAAAGGCTGATACAGAAGTGAGTGAAACTCCAACTGCTGTGAAGACGA
GTAAGCCGAGTCCATTTGGAGCAGCTAGACCGAGAGAGCAAGTTTTGGCGGAGAAAGGATTGGACTGGAAGAAACTTGAC
TCGGATATTGAGGCCAAGAAGGGACAAACAAGCAGACCATCAAGCGCGCAATCGAGCAGACCATCAAGTGCTCAATCTAA
CAGGTCTGAGAGTTCAGCATTGAACAATGTGGAGAATGTGGTGAAACCGAGACCAAAGGTGAATCCTTTTGGTGATGCAA
AACCTCGGGAAGTATTGCTGGAGGAACAAGGGAAAGATTGGCGCAAGATTGATTCTGAACTCGAGCATCGCAGGGTTGAC
AGGCCTGAAACAGAGGGAGAGAGGATGTTGAAGGAAGAGATTGAAGAACTACGGAAGAAACTCGAGAAGGAGGCAGCCAT
TGCACCTGAGAGCAAGGAATCTCAACAGGAATCCGACAGTAATCACCAAAATCTACCGGATCTCATACGTGAGAAAGAAA
AGAACCTAGACTTACTGATCCGTGAGCTGGACGACAAAGTCAGGTTCAGGCCACGAGCAGTTGAGAGGCCTGGATCCAGT
GCAAGCAGAGGCGGTTCCTATTCAGAAAGACCACATTCACGGGCTGGATCAATCGATGAGTCTAGGAGTGTTGAATCCAT
GGAAAGACCTAGATCACATGGCACAGGCGATAATTGGCCAAGACCAGTAGATGATCGAAGAAACTTCCAAGGAAGCAAGG
AACGTGGATTCTTCAACAACAGAAACTTCGACAGGTCATCGTCAGCAAGGGAAGGATGGTAAAAAAGGAAAGGAAGGATG
AATGTGGAATGAGATTGGAGTTTGGCTGACACACCATTCTCAGATTTTGAAGAAGACAGATAAGAGAGAAGCTTCAATAA
CATTAATAAGAAAAATTCATCTCCTTTTTTAAAAAACCTAATTAGGGGTTTTTTCTTTTTTTGTTTTTACTGGTTCATCT
TCGGTATTGAAGCCTAATGGTTTCTTCTTCTACTTGTTTTTTTGGTCATTTGCTCGTGAAACGGCAGAGCACAAGACTTG
TGACAATTGATGTGTCTTCAGAATTTTTGGAGACAGAGACTCTGTTCTGTTCCTTCTTCTCTGTTTAAACATTCTATTTA
CCACTACTGTTTCTAAGTGTGTCTTATTGTCATCTTCTATTTCAA
1=============================Open Reading Frames===========================2205
===== ===== +1
============================================================ +2
===================== ==== ==== === +3
===== ==== -3
===== ====== === ==== -2
========= =========== -1
============================================================ ESTScan(+)
=============================================================== framefinder(+)
________________________________________________________________________________
1===================================TC283824================================2205
1 > 7 > 11 > < 13
2a > 8 >
.............................................................< 2b
3 > 9 > < 14
4 > 10 > < 15
5 >
6 >
12 >
< 16
< 17
# Src EST Id GB# Clone/Protein left right Library/Protein name
1 I024 BP830654 BP830654 RAFL22-86-B05 1 399 RAFL19
2a I024 AU239467 AU239467 RAFL19-84-H07 22 556 RAFL19
2b I024 AU230776 AU230776 RAFL19-84-H07 1711 2132 RAFL19
3 I024 BP830456 BP830456 RAFL22-85-G21 45 443 RAFL19
4 I024 BP831426 BP831426 RAFL22-88-P05 45 448 RAFL19
5 ETG NP035658 AC007357 AAD31055 173 1822 EST gb|T22808 comes from this gene.
6 ETG NP166532 AF136007 AAF27287 173 1822 eukaryotic initiation factor 4B
7 I008 4816 T22808 107G18T7 865 1072 Lambda-PRL2
8 ETG NP166524 AF145231 AAF27293 866 2174 eukaryotic initiation factor 4B
9 I034 5790215 DR362568 1161394 869 1361 CERES-AL45
10 I034 5790430 DR362569 1161609 869 1369 CERES-AL45
11 I006 AV551491 AV551491 RZ127e03R 1128 1432 Arabidopsis thaliana roots Columbia
12 I02D 206i20.p1 CK120662 MPMGp2011I2020 1212 2016 AtM1
13 I006 AV539118 AV539118 RZ127e03F 1648 2205 Arabidopsis thaliana roots Columbia
14 I002 701671572 AI997935 701671572 1693 2159 A. thaliana, Columbia Col-0, rosette-1
15 I024 BP671860 BP671860 RAFL21-42-B01 1756 2174 RAFL21
16 I024 BP795555 BP795555 RAFL07-65-F21 1760 2160 RAFL7
17 I024 BP663216 BP663216 RAFL21-47-C24 1767 2174 RAFL21
Sequence source codes:
I002 Genome Systems Inc. a wholly owned subsidiary of Incyte Pharmaceuticals Inc.,
I008 Michigan State University, Dept. of Biochemistry & Molecular Biology
I006 Kazusa DNA Research Institute, The First Laboratory for Plant Gene Research
I034 Ceres Inc,
I02D Max Planck lnstitute for Molecular Genetics, Plant Protein Chip Group, Department Lehrach
I024 RIKEN Genomic Sciences Center, Plant Functional Genomics Research Group
ETGB Expressed Transcripts from GenBank
TC sequence strand: coding strand
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Evidence for coding strand | Evidence for reverse complement |
Inconclusive evidence |
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| ESTs | 5' ESTs | (used as +) | 7 | (used as -) | - |
(5'/3' source not known) |
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| 3' ESTs | (used as -) |
5 | (used as +) | - |
| total | 12 |
- | 3 |
| Expressed transcripts | 2 | - | |
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| Predicted genes | 1 | - |
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| Protein hits | 4 | - |
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| Trimmed polyA/T | - | - |
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Tentative Annotation:
UP|Q9SAD7_ARATH (Q9SAD7) F3F19.4 protein, complete
0
GO annotation
| GO id | GO term | EC# | Type | GOpep link | %sim | %cov |
| GO:0003743 | translation initiation factor activity | - | M | TAIR|gene:2031794 | 100 | 100 |
| GO:0008372 | cellular component unknown | - | C | TAIR|gene:2079245 | 87 | 79 |
| GO:0000004 | biological process unknown | - | B | TAIR|gene:2079245 | 87 | 79 |
Maps to :
| Genome | Chromosome | End5 | End3 | Score | Show genomic alignment with: |
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| Arabidopsis genome |
chr1 |
4,440,542 |
4,443,690 |
2188 |
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Comments and suggestions : Contact Us
| Acknowledgements |
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The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416. |
