The DFCI Arabidopsis thaliana Gene Index (AtGI)
AtGI TC Report:
EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. 

>TC282248 TC148759 TC160347 TC182105
ATGGTTGATCAAGTGATCCCTAATCAACCCACGGTTGCTGCTGCTGCTCCTCCTCCTTTCCCTGCCGTGAGTCAGGTTGC
GGCGGTTGCTGCTGCTGCTGCTGCAGCGGAGGCTTTGCAAACCCATCCAAACTCGTCTCTCTATGTCGGAGATTTAGATC
CGAGTGTCAATGAGTCACATCTCTTGGATCTCTTTAATCAAGTTGCTCCAGTTCACAATCTTAGGGTTTGTCGTGATCTG
ACTCATCGTTCTCTTGGTTACGCTTACGTCAATTTCGCTAACCCTGAAGATGCGAGTCGTGCGATGGAAAGTCTCAACTA
TGCTCCGATCAGAGACAGGCCTATAAGGATCATGCTCTCTAATCGTGATCCGAGCACTAGATTGAGTGGGAAAGGCAATG
TTTTCATCAAAAACCTTGATGCATCGATTGATAACAAAGCTTTGTATGAAACTTTCTCGTCTTTCGGGACGATTCTCTCT
TGCAAGGTTGCAATGGATGTGGTGGGACGTTCGAAAGGATATGGCTTTGTCCAGTTTGAGAAAGAGGAAACCGCTCAGGC
TGCTATTGACAAGCTTAATGGTATGTTGCTTAATGATAAGCAAGTCTTTGTTGGCCATTTTGTCCGTCGTCAAGACAGGG
CACGTAGTGAGAGTGGTGCGGTGCCGAGCTTCACTAACGTTTATGTTAAGAATCTTCCTAAGGAGATTACTGATGATGAG
CTTAAGAAGACTTTTGGGAAATATGGAGATATTTCTAGTGCGGTTGTGATGAAGGATCAGAGTGGGAACTCGAGGTCTTT
CGGGTTTGTCAACTTTGTGAGCCCTGAAGCTGCTGCAGTTGCTGTTGAAAAGATGAACGGTATCAGCCTTGGGGAGGATG
TGTTGTATGTTGGTAGGGCACAGAAGAAGTCTGATAGGGAAGAGGAATTGAGGAGGAAGTTTGAGCAAGAGAGGATAAGC
AGGTTTGAGAAATTGCAAGGATCGAATCTGTATTTGAAGAACCTTGATGATAGTGTGAATGATGAGAAGCTCAAGGAGAT
GTTCTCTGAGTATGGGAATGTGACTTCCTGCAAGGTTATGATGAATTCACAAGGTTTAAGCAGAGGTTTTGGTTTTGTTG
CTTACTCCAATCCTGAAGAAGCTTTATTAGCTATGAAAGAAATGAATGGGAAGATGATAGGAAGGAAACCTCTTTACGTT
GCTTTGGCACAACGTAAGGAAGAAAGACAGGCTCACCTTCAGAGTCTATTTACTCAAATCAGATCACCTGGAACAATGTC
ACCAGTTCCATCACCGATGTCTGGGTTCCATCATCACCCACCAGGTGGGCCAATGTCAGGACCACACCATCCAATGTTCA
TAGGCCATAACGGTCAAGGTTTGGTACCTTCACAGCCTATGGGGTATGGGTACCAAGTTCAGTTCATGCCTGGGATGCGT
CCAGGTGCAGGCCCGCCTAACTTCATGATGCCTTTCCCTCTTCAAAGGCAAACTCAGCCTGGCCCTCGTGTTGGGTTCAG
GCGTGGTGCTAATAACATGCAGCAGCAGTTTCAGCAACAACAAATGCTGCAGCAAAATGCAAGCAGATTCATGGGAGGCG
CAGGCAACAGGAGGAATGGAATGGAAGCATCTGCTCCACAAGGCATCATCCCTTTGCCATTGAATGCATCTGCAAACTCT
CACAATGCTCCGCAACGCTCTCACAAGCCAACTCCCCTCACCATTTCTAAGCTCGCATCTGATTTGGCTTTGGCTAGCCC
CGACAAACACCCACGGATGCTTGGGGATCATCTTTACCCACTTGTGGAGCAGCAGGAGCCAGCAAATCCTGCTAAAGTTA
CCGGGATGTTGCTGGAGATGGATCAAGCTGAGATTTTGCACCTTCTTGAGTCACCTGAAGCTCTTAAGGCTAAAGTGTCC
GAGGCTCTGGATGTTCTCAGACGCTCTGCTGATCCAGCAGCTGTGTCATCTGTTGATGACCAGTTTGCTCTATCCTCATC
CGAGTGA
1=============================Open Reading Frames===========================2007

 ===============================================================================  +1
                 ===============                                 ==============   +2
                                                                                  +3
                                                                                  -3
                                                                           =====  -2
 ===== =================                            ================              -1
 ===============================================================================  ESTScan(+)
                                                                                  
 ===============================================================================  framefinder(+)
________________________________________________________________________________

1===================================TC282248================================2007
                                       1                                       >
                                       2                                       >

                                                                                                                                                            
#  Src  EST Id              GB#           Clone/Protein   left  right Library/Protein name
                                                                                                                                                            
1  ETG  NP044469            M97657        AAA32832            1  2007 poly(A)-binding protein
2  ETG  NP184415            AC012654      AAF43230            1  2007 Identical to the polyadenylate-binding protein 5 (PAB5) from Arabidopsis thaliana gb|M97657.



Sequence source codes:

ETGB Expressed Transcripts from GenBank

TC sequence strand: coding strand

Evidence for coding strandEvidence for reverse complement Inconclusive evidence
ESTs5' ESTs (used as +) - (used as -) - (5'/3' source not known)
3' ESTs (used as -) - (used as +) -
total- - -
Expressed transcripts1 -  
Predicted genes1 -
Protein hits5 -
Trimmed polyA/T- -

Tentative Annotation:
GB|AAA32832.1|166786|ATHPABP poly(A)-binding protein {Arabidopsis thaliana} (exp=-1; wgp=0; cg=0), complete 0

GO annotation

GO idGO termEC#TypeGOpep link%sim%cov
GO:0008143poly(A) binding-MTAIR|gene:1944658 99100
GO:0003723RNA binding-MTAIR|gene:2009035 7965
GO:0003743translation initiation factor activity-MTAIR|gene:2009035 7965
GO:0012505endomembrane system-CTAIR|gene:2012160 8255
GO:0006413translational initiation-BTAIR|gene:1944658 99100
GO:0000289poly(A) tail shortening-BTAIR|gene:1944658 99100

Referenced by :
Tentative Ortholog Group 1096177 (general group)
Tentative Ortholog Group 1096178 (general group)
Tentative Ortholog Group 966289 (general group)
Tentative Ortholog Group 966561 (general group)
Maps to :
GenomeChromosomeEnd5End3ScoreShow genomic alignment with:
Arabidopsis genome chr1 26,994,439 26,997,109 1978    

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Acknowledgements
   The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.