The DFCI Arabidopsis thaliana Gene Index (AtGI)
AtGI TC Report:
EST IDs are linked to AtGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. 

>TC281903 TC59761 TC84855 TC97496 TC148861 TC171269 TC181715
ATGGGTGCTCAGAAGAAACCCGCGGCGGCTAAGGTTCGTGAGGATTCAGAGGATCTAAGTCGTCAACGATTACAAGCCAT
TCTTCTAGCCGACAGCTTCACCACTCAATTCCGTTCCATAACCCTAGAACGACCAAAGGTACTATTGCCGATAGTGAACA
TCCCGATGATTGATTACACTTTAGCATGGCTCGAATCAGCTGGGATCGAAGAGGTTTTTGTGTTCTGTTGTGCTCATTCG
TCGCAGATCATCGATTACCTGAAGAAATCGGAATGGTACACACGCCCAAACCCAAACTTGTTGGTGAGAACGATAGTGTC
TCACAATTCCACCAGTGTTGGAGATGCTCTGCGTTATATCTATGAACAACAGACAGAGACGTCGCAGATTCAAGGTGATT
TTGTTCTTGTTAGTGGTGATACTGTTAGTAATATGCCACTTGCTGATTTGATTCAACAACATAGAGATAGGAAGAAGAAA
GATGAGAAAGCTATCATGACTATGGTTTTTAAGAAGCAGTCTAGACTAGGAATAGGATCTGATCAACTCTTTGTTGCAGT
AGATCCTTTAACGAAACAGCTTCTTCATTACGAGGAATGTAATTCGAGAGGCGGGGACTTTTGCTTAGATAAGTCCTTGT
TGGATAGTACTGTTTTATGCAGTGATATGCAGGATTGTTACATTGACATTTGTTCTCCTGAGGTGCTTAGTCTCTTTGAG
GATAACTTTGATTATCAGCATATGCGCCGTCATTTTGTTAATGGTTTGCTTGTTGATGATATTATGGGTTACAAGATTTT
CACTCATGAGATTCAGTCGAGTTGTTATGCTGCAAGGATCGACAATTTACGGAGCTATGACACTGTTAGCAAGGATATAA
TCCAGAGGTGGACATACCCGTACGTACCTAATATCGATTTCAGCGGGAATCGCCCTGTAAAGCTCGGGAGACGGGGGATA
TACCGGGCTTCTGATGCAGTTCAATCACACACTGCAGATGTTGGAGCTTCCACTGTCATTGGATATGGCACCAAAATTGG
TAATGGAGGTAAAATCTATAACTCTGTTATTGGGAACGGATGTTGTATTGGATCAAATGTGGTGATACAAGGCTCATACA
TATGGAACAATGTTACGATTGAAGATGGGTGTGAGATAAGGAACGCTATTGTCTGTGATGGTGTGAAAGTCAGAGCAGGA
GCTGTTCTGCAGCCTGGTGTTGTTTTGTCTTTCAGTGTTGTAGTTGGGCGGGACTTTGTTGTACCTGCATATTCAAAGGT
CTCTTTACTTCAACAGCCAACTACAGAAGACAGCGATGAAGAGCTGGAATATGCTGATAGTAGCAGCGGGACTGCAGATC
ATTCGTCAGGCCTAAATAATTTGCAAATTGAGTCCAAAGCATCTGAGCTTGGTCCTGATGGAGCAGGTTACATCTGGGAA
ATATGTGACAGCGCTCATGATGAGGAGTGGAAACATTCTGTTGTACCAATCCCCATGGATAAACTTGCCGATATCACTGG
GGCCATGGACGATGATGACATAGAGGATGACATTGTTGTCCCACCTTCTGGAGAGTTGAAATCTGATACTGATATTATTA
ACACTGATGCAAATGATTCCTATGGCGACTTTGAGAGAGAGGTTGAAGAAGAATTCTTAAGTGCCGTTGAAAAGGATAAC
AAAGCGGACATTGTAATTCCTTTGATTAACTCACACCGGTTGGCGTACAACATGGACTCTGCAGATTGTGCTGGAGCAGT
ATTCTACTCTATGATGAGACTGGCAGTAAAGAGTCCACATAATTCTGCTACTGAATTGTACAGAAACGCGATGGGTGTCA
TAACTAAATGGAAGGGAGTTCTTGGGTTCTATTTAAAGCAAACTGATGCACAGATAGAAGTGATAATGAAATTCGAAGAG
ATGTGTCAGGAATCTGAAGAGTTGAGCCCTTTGTTTGCTAAACTTCTGCCTTTTCTGTATGACAAAGACGTGGTGCAAGA
AGATGCGATCTTGAGATGGGGGGAAGAGAAAGCAGGAGCAGACGATTGTGACAAAGTTTATCTGAATAAATGTGAGTCAT
TCATAAAGTGGCTCAAGGAAGCATCTGAGGAGGAAGAAGAAGATAGTTAGATTGGTAAGCGTGACTTTCGATAGGTTGCA
ATGTGATTTCATTATACAGTCTATTTTGTAAAGTGATAATTTACATTTAAGATAGTAGTACTCTGTTATTTAACTGGCAT
CATCAACAATCTTTTGTTAGGTTTGTTGTTGAATGAGATATTTCCC
1=============================Open Reading Frames===========================2286

 ===========================================================================      +1
             ====         ==== =====         ====                                 +2
        ======                                                                    +3
                                               ===                  ====          -3
                                                          ====                    -2
        =========     =====                  ====                                 -1
 ===========================================================================      ESTScan(+)
                                                                                  
 ===========================================================================      framefinder(+)
________________________________________________________________________________

1===================================TC281903================================2286
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#  Src  EST Id              GB#           Clone/Protein   left  right Library/Protein name
                                                                                                                                                            
1  ETG  NP037956            AL021713      CAA16802            1  2130 initiation factor-2Bepsilon-like protein
2  ETG  NP189150            AL161548      CAB78832            1  2130 initiation factor-2Bepsilon-like protein
3  I02B 08K14               CD530935                       1927  2286 Arabidopsis Leaf Senescence Library
4  I02B 35M2                CD534125                       1927  2285 Arabidopsis Leaf Senescence Library



Sequence source codes:

I02B Cornell University, Department of Horticulture
ETGB Expressed Transcripts from GenBank

TC sequence strand: coding strand

Evidence for coding strandEvidence for reverse complement Inconclusive evidence
ESTs5' ESTs (used as +) - (used as -) - (5'/3' source not known)
3' ESTs (used as -) - (used as +) 2
total- 2 -
Expressed transcripts- -  
Predicted genes2 -
Protein hits3 -
Trimmed polyA/T- -

Tentative Annotation:
UP|O49733_ARATH (O49733) Initiation factor-2Bepsilon-like protein, complete 0

GO annotation

GO idGO termEC#TypeGOpep link%sim%cov
GO:0003743translation initiation factor activity-MTAIR|gene:2076476 8871
GO:0006446regulation of translational initiation-BTAIR|gene:2076476 8871

Maps to :
GenomeChromosomeEnd5End3ScoreShow genomic alignment with:
Arabidopsis genome chr4 10,118,863 10,121,148 2286    

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Acknowledgements
   The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.