The DFCI Rattus norvegicus Gene Index (RGI)
RGI TC Report:
EST IDs are linked to RGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. 

>TC631466 TC186943 TC210132 TC243769 TC297102 TC338577 TC397535 TC423324 TC488671 TC531809 TC571871
GGCGGCAGGACCAGCATGCACCACCGGAACGACTCCCAGCGTCTGGGGAAGGCTGGCTGTCCGCCAGAGCCGTCGTTGCA
AATGGCAAATACTAATTTCCTCTCCACCTTATCCCCCGAACACTGCAGACCTTTGGCGGGGGAATGCATGAACAAGCTCA
AATGCGGCGCTGCTGAAGCAGAGATAATGAATCTCCCCGAGCGGGTGGGGACTTTTTCCGCTATCCCGGCTTTAGGGGGC
ATCTCATTACCTCCAGGGGTCATCGTCATGACAGCCCTTCACTCCCCCGCAGCAGCCTCAGCAGCCGTCACAGACAGTGC
GTTTCAAATTGCCAATCTGGCAGACTGCCCGCAGAATCATTCCTCCTCCTCCTCGTCCTCCTCGGGGGGAGCTGGCGGAG
CCAACCCGGCCAAGAAGAAGAGGAAAAGGTGTGGGGTCTGCGTGCCCTGCAAGAGGCTCATCAACTGTGGCGTCTGCAGC
AGTTGCAGGAACCGCAAAACGGGACACCAGATCTGCAAATTTAGAAAATGTGAAGAGCTAAAGAAAAAACCTGGCACTTC
GCTAGAGAGAACACCTGTTCCCAGCGCTGAAGCATTCCGATGGTTCTTTTAAAGCTGTAGTGTACCTTATTTTCAAGGCA
TTTGGAAATGAAGGGCAAACTAATGTCTTGTTTTAAGAAACCACTTAGTCCACCATTGAAGAAATTATCCAGAAATTATT
TTCATTTTATGTATAGGGATTTCTTCAAAAAAAAAAAAACCAAGAGGAAAAGAAATCAACAACAACAACAACAACAACAA
CAAGACACACAAAAATAAGAGGGAAGGTTGGGGATTGGCCGGTTTATTTACGTTCAATACACTGATTCTTCCTTTGATGT
ATCTAGCTATACTAGTGAAGCTGTTGTCTATTTTGAAAGTGGCTGTAAAAAAAAATAAGTTTGGGTAACCCCCGACTGTA
AAATGATGTATCTTTGCAAAGTACATATCTATACTTCATTTTCATATATATGTGTTCCAGTACCGTAAACTGTACAGACA
GCGGCTTGTATTTTGTGTGTTTAGACACAAGGAGACAATCAGGTCTGTGCAACTATGGAGATTAACGGTTTGTACACAAA
ACTATGGTTCTGCAAGTTAAAAAATCCGGAGCAATAAATTTTAGCTTTAAATATNNNTATATATTTTTTGCCATTTGTTT
TTAGGAGCAGAAACAANACCGGTGGTTTTCATGCATCCTTCTGTAGAGACTTGTTGGCTGGTTTTTACGAGACGAAAAGA
TTAGCCCTGCATCCAGCAATTACCTTCAGTTGTGTTGATATGAGAGGGAAAGCTACTAGGAAGGTTTCCATTATCTTTTG
AGCACTATATTAGAGTAGTGGTTATGCATTTGCATTGCTTACAGACGAGCTGTACAGAGGGTCTACCTCCCAATATTTAG
TGTAGTTGACTTGTTTGGGTTGCACTGTAAGGGAGTACGCTGAATAGTTGGAAAATGCAGAATCAGTTGTATCTTTTTTT
TTTTTTTAAATTGGAAAAGCGTGTTCTAGGCTAACGATATCCGATCATAGAAAGAGAAATTCATGCCTGACTCCACTTTT
TTTCCCCCTCCTAGCCGTACACAGGTTGTTCAAGCTTTTTTATTCTTATTTTTTTTTGCTTCGGGGAGGGGTAGAAAAAA
ATAAAAACAAAAACAGAAGAGTATTCAAAATGTTTTAATTCCATGTGTGGCGTTGAATGGGTAGGTTTCAAACAATACTC
AAATGCATTGAAGCCTACTTTAAGGCTTGGTTGGGCTTATTTTCAAGTTCAAAATAATTAAACACATTCATTAAAAGTGG
GACCTTTTTGTTTCTTTACCTTCCCTTCCTCAGTCTCTCAGTGGGACACCTACTGCTTCCATTCCCTTTCTTACCACTGG
AAGCTTTCTTTTCATGAAGCAAGGCCACATTGTAAGGAATTTCATAAAAAAAAACCAACACAGCCCATCTGCCCCCCAGG
ATGCTTTATAGAACCCGGGCTGCGTTACTCGGTAAGGTTTGATTTTCCTAGGACTGTCATGCTTCTCAAATGATGCCTGT
CCCAATAAGACAAACACTTTCATTGATTTATTTTATTTTAGCCTAAACGAACCAGTTTCAGGAATAAAACATAGTTTAGG
AAAGACACGTAGAATAACAAAGTTGCCATGTTAAATTACATCTCCGTTTTTTATGCCTGTCAGACAGGTTAGCAAGATGG
GTGAGAAGGAAAACAACAGCAGAGTGATAAGTCAGCGAGGACTTTAGAGTCTAAAGAGCTTCAAAGGCTGGCTGGGGAAT
ATTTTTTAAATCTCATTTTAGATTTAAGTGGAGGAGGGATGACATTATTTTTTTTCCAAAGGCAGGTCAGGTACGCCATC
ATTGGTCACCTGGATGAGAGCATAGTAGGTTTGTATGATGCCAGTGTAGGGTACCAGCGGGATGGATGTGCCTAGCTAGC
AGACCAGTGCTGAGTCTGCAGTATGGTCAAGCAGCCTGTGAGGAAAACGCTTTATGTATCACACCTGCCCGGGCTTAAAG
AGAGGGATGAGCTCATCAAAAAGTAAAATGCGCTGTATATTACTTTCGAGATATCTTTCTACTCCATGTGTATCCCTTAG
AGTGTTCGTAGCTATAATTTCTGTTTCTGCTGTAGGACCAATGAGAGGTATATGAGTTCTCTGGATCCGCCGCCGC
1=============================Open Reading Frames===========================2716

 ==================                                                 ====          +1
 ====                                         ===                       ====      +2
                    =====                                                         +3
 ======== ===     ========                ====               ===                  -3
                           ====                       =======           =====     -2
                                                                              ==  -1
 ====================                                                             ESTScan(+)
                                                                                  
  =================                                                               framefinder(+)
________________________________________________________________________________

1===================================TC631466================================2716
          1          >  <    5     
          2          >                    6          >
             <   3     
                  <       4        
                                                         7a        >
                                                 ...........<        7b         

                                                                                                                                                            
#  Src  EST Id              GB#           Clone/Protein   left  right Library/Protein name
                                                                                                                                                            
1  ETG  NP332747            AF272158      AAG42071            1   746 Dvl-binding protein Idax [Rattus norvegicus]
2  ETG  NP409104            NM_053342     NP_445794           1   746 inhibitor of the Dvl and Axin complex [Rattus norvegicus]
3  I002 UI-R-BS2-bdl-c-04-  BF389137      UI-R-BS2-bdl-c    440   746 UI-R-BS2
4  I002 UI-R-CA0-bhn-d-02-  BF402362      UI-R-CA0-bhn-d    610  1170 UI-R-CA0
5  I002 UI-R-CA0-bgp-c-12-  BF393041      UI-R-CA0-bgp-c    818  1170 UI-R-CA0
6  I09E RVL10017            DV719289                       1125  1840 Wackym-Soares normalized rat vestibular cDNA library
7a I03E BP502377            BP502377      RI01299          1658  2303 Rattus norvegicus insulinoma RINm5F
7b I03E BP503197            BP503197      RI01299          2024  2716 Rattus norvegicus insulinoma RINm5F



Sequence source codes:

I03E Institute for Molecular and Cellular Regulation  Gunma University,  
I09E Department of Otolaryngology and Communication Sciences, Department of Otolaryngology and Communication Sciences
I002 University of Iowa, Program for Rat Gene Discovery and Mapping
ETGB Expressed Transcripts from GenBank

TC sequence strand: coding strand

Evidence for coding strandEvidence for reverse complement Inconclusive evidence
ESTs5' ESTs (used as +) 1 (used as -) 1 (5'/3' source not known)
3' ESTs (used as -) 3 (used as +) 1
total4 2 -
Expressed transcripts2 -  
Predicted genes- -
Protein hits5 -
Trimmed polyA/T3 -

Tentative Annotation:
UP|Q9EQC9_RAT (Q9EQC9) Dvl-binding protein Idax, complete

Similarity search results:

DescriptionHit coverage% ID% SimSeq LeftSeq RightHit LeftHit Right
UP|Q9EQC9_RAT (Q9EQC9) Dvl-binding protein Idaxcomplete 100.00 100.00166091198
homologue to UP|Q800L6_XENLA (Q800L6) Idax proteinpartial (79%) 96.49 97.08225672174
RF|XP_852714.1|74002314|XM_847621 similar to CXXC finger 4 {Canis familiaris} (exp=-1; wgp=0; cg=0)complete 99.35 99.351486091154
homologue to UP|Q4RJD6_TETNG (Q4RJD6) Chromosome 18 SCAF15038 whole genome shotgun sequence. (Fragment)partial (89%) 96.10 98.057656718172
RF|XP_590456.2|76670592|XM_590456 similar to CXXC finger 4 {Bos taurus} (exp=-1; wgp=0; cg=0)complete 100.00 100.002686091114

Referenced by :
Tentative Ortholog Group 1033580 (general group)
Tentative Ortholog Group 1062623 (general group)
Maps to :
GenomeChromosomeEnd5End3ScoreShow genomic alignment with:
Rat genome chr2 231,705,560 231,724,941 2652
Mouse genome chr3 134,177,536 134,197,610 1997
Human genome chr4 105,610,856 105,631,916 1154
Chimp genome chr4 107,819,257 107,840,753 1153
Rhesus macaque genome chr5 97,532,718 97,554,081 1096

Comments and suggestions : Contact Us

Acknowledgements
   The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.