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The DFCI Mus musculus Gene Index (MGI)
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MGI TC Report: |
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EST IDs are linked to MGI EST reports. ET# s are linked to
qcGene
reports. GB#s are linked to
GenBank
accessions.
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>TC1591070 TC1392271 TC1563150
AAGAGGTAATCCAGAACTCAAGGAGCGCGGGCGCAGCAGCTGTGAGCATTAGGTGCTGTGGCCAAGCGCTGGGACAAGGA
TCTGCCGCTACCAGCGCATCCTCTCTCCTCTCCAGCTCTGTCCCGCACTCGCTGCACCCTTCCCCAGGCCACCGCGCTTC
CTATGTGATCTTCCGGGGCAACGCGGAGCCCTTTCTCACAGCTCAGCAGTGAATTTCCACCCCGAAAACTGCAGTAAGCC
GCCTTTCAAGGACAAGATGTTGATAAATATGAAAGGCATCTTATGGATGTGCTCAACCTTATTACTAACCCATGCACTAC
ATCAAGCCAAAATGGAAACCAGCCCACCTGTTAAAGGCTCTCTGTCTGGAAAAGTGGTCCTACCTTGTCATTTTTCAACC
TTACCTACCTTACCACCCAATTACAACACGAGTGAATTTCTCAGAATCAAATGGTCTAAGATGGAAGTGGACAAAAATGG
AAAAGATATAAAGGAGACGACTGTCTTGGTGGCCCAGAACGGAAATATCAAGATTGGTCAGGACTACAAGGGGCGAGTGT
CCGTGCCTACACATCCCGATGATGTAGGTGATGCTTCCCTCACCATGGTCAAACTCCGGGCTAGTGATGCAGGCGTCTAC
CGATGTGATGTCATGTATGGGATTGAAGACACTCAGGACACCATGTCACTGGCTGTGGATGGTGTTGTGTTTCACTACAG
GGCAGCCACCAGCAGGTACACTCTGAACTTTGCCGCTGCTCAACAGGCTTGTTTGGATATCGGGGCGGTCATAGCAAGCC
CAGAGCAGCTGTTTGCCGCCTATGAGGATGGATTTGAGCAGTGTGATGCAGGATGGCTGTCTGATCAAACTGTCAGATAT
CCCATACGGGCTCCCCGAGAGGGCTGTTACGGAGACATGATGGGGAAGGAAGGGGTTCGGACCTATGGATTCCGCTCTCC
CCAGGAAACCTATGATGTGTATTGTTATGTGGATCATCTGGATGGCGATGTGTTCCACATCACTGCTCCCAGTAAGTTCA
CCTTCGAGGAGGCCGAAGCAGAGTGTACAAGCAGGGATGCGAGGCTGGCGACTGTTGGAGAACTTCAGGCAGCTTGGAGA
AATGGCTTTGACCAATGCGATTACGGCTGGCTGTCGGATGCCAGCGTGCGGCACCCTGTGACTGTGGCCAGGGCCCAGTG
TGGAGGAGGTCTACTTGGGGTGAGAACCCTGTATCGTTTTGAGAACCAGACATGCTTCCCTCTCCCTGATAGCAGATTTG
ATGCCTACTGCTTTAAACGTAAGTGTTTGATATCTCTTTTAAAAATACAGATTAAAAAGCTGCAGCAAATATATACCCAC
TGAGGTTCCAGTGGATGTCGGGATGGATTCTGTATTCTGTACTAAGTGCATGGAGGACCTACAGTGCAGTGACACAAACA
GACTTAATACCACCATTATGGTTAACACAGTAGGGAGTTTGGCAAGTGGGATTTTTTTTGGGAGGTGGGGAGATAACAAC
GTCAGAGTGGGGTCTTAACTGCACCCCAGAATTCCAAAAATCACAGAACACACCCTGAATTGAAATTTCTTATTAATTGA
AGCCTTTCAATGCAATTTCACTCTTAATATAACAATGTTAAGACAACAGCAGCTGAGTTAAACCTTTGAATCCTGTTTTA
TTTTTTGATATGATTCTTATTATAAAAAGGAGACAATTTAAGCTTAAGTCATTGCAGGTGAGTATTTGTGCTGAAATTAA
TAATGATTGTGTTCAATTCCTACCTAAAAATGCATCATACTATCAAATAATACGATTCACATATCTCATTTTGTTTCAAG
TAATAGAATAGGCGCCTTTTGGCGATTAATCTTGCTTTGAATTAATTAAAGTACAATACAGCCTCCTTGCATGAATTGGC
TATGCTCAGTTAGATTTGCCTTGTAAAATTAATTTTAGGTAGCATTCATTACATATATATATATGTATATATATATATTA
GACATTCTTAAATTATTTTAAAATATTAGTCACATACAGTTTTATAGTTGTAGAGTGCTTAACTAAACTAATAACTAGTC
AATATTTTATTGTAATATGTACTTTAGGATCGGTAAGATGTTAGCTAACAAATGCCTCCATACTTTAGCAACAGAGGCCA
AGTCTGACATCGAGTATCAGAACAATGAAAAGCCAATGTAACACATGAAGTCTTTTAAACCAGCTTTCTAATTCCTTTTG
TTAGATCAATGGGTAATTAAAATAGCTTGAAAATGT
1=============================Open Reading Frames===========================2276
==== ====== +1
======================================= +2
======= ====== ===== ========= ===== === +3
-3
====== =========== ===== -2
======== -1
======================================================= ESTScan(+)
============================================= framefinder(+)
________________________________________________________________________________
1==================================TC1591070================================2276
1 >
2 > 5 >
3 > 6 >
4 >
# Src EST Id GB# Clone/Protein left right Library/Protein name
1 ETG NP1486953 BC096495 AAH96495 1 2276 Cspg2 protein [Mus musculus]
2 I09B LL6in23176 BQ828249 13 371 AFT024-subtracted library
3 I025 CJ103747 CJ103747 M421038D13 13 399 RIKEN full-length enriched mouse cDNA library, C57BL/6J pooled tissue 7
4 ETG NP581156 AK034871 BAC28862 20 2275 unnamed protein product [Mus musculus]
5 I025 BB095619 BB095619 9430051N09 1573 2275 RIKEN full-length enriched, 12 days embryo, embryonic body
6 I025 BB096752 BB096752 9430056H23 1946 2274 RIKEN full-length enriched, 12 days embryo, embryonic body
Sequence source codes:
I09B Princeton University, Department of Molecular Biology
I025 The Institute of Physical and Chemical Research (RIKEN), Laboratory for Genome Exploration Research Group, RIKEN Genomic Sciences Center(GSC), Yokohama Institute
ETGB Expressed Transcripts from GenBank
TC sequence strand: coding strand |
Evidence for coding strand | Evidence for reverse complement |
Inconclusive evidence |
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| ESTs | 5' ESTs | (used as +) | 2 | (used as -) | - |
(5'/3' source not known) |
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| 3' ESTs | (used as -) |
- | (used as +) | 2 |
| total | 2 |
2 | - | | Expressed transcripts | 2 | - | |
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| Predicted genes | - | - |
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| Protein hits | 5 | - |
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| Trimmed polyA/T | - | - |
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Tentative Annotation: UP|Q8BS97_MOUSE (Q8BS97) 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430051N09 product:chondroitin sulfate proteoglycan 2, full insert sequence, complete
Similarity search results: | Description | Hit coverage | % ID | % Sim | Seq Left | Seq Right | Hit Left | Hit Right |
| UP|Q8BS97_MOUSE (Q8BS97) 12 days embryo embryonic body between diaphragm region and neck cDNA RIKEN full-length | complete | 100.00 | 100.00 | 257 | 1360 | 1 | 368 |
| UP|Q4VA91_MOUSE (Q4VA91) Cspg2 protein | complete | 99.46 | 99.46 | 257 | 1360 | 1 | 368 |
| homologue to UP|Q3TQ47_MOUSE (Q3TQ47) 0 day neonate cerebellum cDNA RIKEN full-length enriched library clone:C230064F06 | partial (57%) | 98.87 | 99.15 | 257 | 1315 | 1 | 353 |
| UP|Q3UXS4_MOUSE (Q3UXS4) 12 days embryo male wolffian duct includes surrounding region cDNA RIKEN full-length | partial (68%) | 99.15 | 99.15 | 257 | 1315 | 1 | 353 |
| UP|Q3TNR6_MOUSE (Q3TNR6) 2 days pregnant adult female oviduct cDNA RIKEN full-length enriched library clone: | partial (95%) | 99.15 | 99.15 | 257 | 1315 | 1 | 353 |
Maps to :
| Genome | Chromosome | End5 | End3 | Score | Show genomic alignment with: |
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| Mouse genome |
chr13 |
90,185,431 |
90,216,526 |
2230 |
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| Rat genome |
chr2 |
19,775,194 |
19,812,468 |
1384 |
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| Rhesus macaque genome |
chr6 |
79,659,694 |
79,700,957 |
812 |
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| Chimp genome |
chr5 |
32,134,002 |
32,164,105 |
757 |
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| Human genome |
chr5 |
82,821,347 |
82,844,950 |
711 |
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Comments and suggestions : Contact Us
| Acknowledgements |
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The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416. |
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