|
The DFCI Mus musculus Gene Index (MGI)
|
|
MGI TC Report: |
|
EST IDs are linked to MGI EST reports. ET# s are linked to
qcGene
reports. GB#s are linked to
GenBank
accessions.
|
>TC1598658 TC35213 TC54782 TC661521 TC864408
TAATTCCATCCAAACCCGGCAGCTGTTAGCCGAGCAAGTGAGTAGTCACACCACCTCCAGCCCTCTGCATTCACGTAGCA
TTGCTGCGGAGCTGGACGAGCTTGCTGATGACCGCATGGCGCTGGTATCAGGCATCAGCCTAGATCCAGAAGCAGCAATT
GGCGTGACAAAGCGGTCGCCTCCCAAGTGGGTGGATGGCGTGGACGAAATACAGTATGATGTTGGCCGCATTAAACAGAA
GATGAAGGAGTTAGCCAGCCTTCATGATAAGCATTTGAACAGACCCACCCTGGATGACAGCAGTGAGGAGGAACATGCCA
TCGAGATCACCACCCAGGAAGTCACACAGGCATGAAAAACCGAGAGGAGAGATCGCAGCATTTCTTCGACACCCCAGTAC
CACTAATGGATGATGGAGATGATGCTACTCTGTATGGTCAGGGCTTCACGGATGACCAGCTGGTGCTGGTAGAGCAAAAC
ACACTGATGGTGGAGGAGAGGGAGCGAGAGATCCGTCAGATTGTGCAGTCCATTTCAGACCTCAATGAAATCTTCAGGGA
CTTGGGAGCCATGATTGTGGAGCAGGGAACGGTCCTTGATAGAATTGACTATAATGTTGAACAGTCCTGTGTCAAGACCG
AAGATGGCTTGAAACAGCTTCACAAGGCTGAGCAGTACCAGAAGAAGAACCGGAAGATGCTTGTGATCGTGATCCTGGTG
GCCGTCATCATAGTCCTCCTCGTGGCCCTCGTCGCCGTAAAGTCTCGCTAGTGGCACCAGGTTCCCGAGAGTGCTACTGT
GTGGATTATTGGTGATAGGACTTGGCTGGTGCCTCACCGCTGCACTGTGTAAAGAGCACAGCCCACTGGTCCATCAGTGG
GCAGCAGACCTTCCCGTGGACACCTTCTAACCAGTGGGCTGGCGTGTAGGCACGGCCATGTTTTCCATCTCTGTCCAGAG
TCTAAGGACTTGATGCTGTTGCCGAAGAGACTGGCCTATGATGAGCTGTCGTGTGAATACGTGCTTTAGTGAAAGGAGTG
GAAGGTTTACAGGCACTGCCAAAGCTCCGTGTCGTGTGTGCATGCTCATTTTTAGCACTAATGTCTGAGCAGCATGTTAA
ATAATTTTTGGGAAATTTTTTTTTTAACCATCTGGTTTTTAAGAAGTTTGGTACCAAAAATTTATGAGTGTAGAGGCAGT
GCCTCTTCATCTTCCCAGCTGAAAACAAAGCAAGAAGTCCTTCAAGGATTTATAATCTGTTCCATTAACTTAATTTAGCT
TTCCATCACTGTTAACGATCAGAGTAACAAAGTGTGAAAAATAAGAAACCATCATTGACGTTAATTAACACATTTAGACG
GGCCAGTTAAACCAGCTTCATGCGTTTAAATCAATTGTAAATAGCATATTCCTCATTCAGAATTTTTGCCCTGCATTTTC
TACTGTAAACCAAGAGGGGTTACTAAGCAAAACCTCCTGAATCAGAAACTTGGTCATTTGAACCAACCTCACATTACAAG
AAAGCTTGACAGTGTGTCCCCAGCCATCCTTCCTCAGTCCATTACTTACATTCTAGCTACGTAATGACCTGTCCAAACCT
GACTCCGTTTAATGAACTGTGAATTTACACAGAGGCCATTTTAAATGGGTCACCCCATTTAGGATTAGTGGATCTCAAAT
TATTAACCAAACATCACTCCATTTCAAAGTAAAATATTCTACACATGATTTGATTTATCGACTCTTGCCACTTAAATGCC
CAGAAAACGGGTGTATTCCTGAGGACAGTGAGAACGTCAGCTAGGGAAACCCTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTGAGGGTTTTTTGGGGGGTTTTTGGGTTTTTGTTTGTTTGTTT
TTTGCGTACGTGTGTGAGCATATCATGTATTATCAGATGGCCAAAGTAGGGTTCTGTTTACTCCCTGTTAACTCTATGGT
GCTCGTGTGCTCTACAGAACTAGAGCGATGCGGACCAGGCTGTCGGAGCTTTGAGAGCGTGCGTATCTCACTCGCTCTGT
TTGCATCAACACTGCTGGAGTTAGAGTGATTGTTGTATAACTGTTGACGGCTTGAAAAAACTCTCTGTGTCTCTTAAATT
ATTTAAACACCGTGGCCCTGTTAAGTGTGTTATATTTTTATTTAGACCAGGCATATGAAATGCCTCTCTGGGACTCACTG
AAGGGTGTCTCAAAACTCCAGCTCAGACCTAGAAATGGAGTCATGTAGACCCATCATGAACTCACTCTCCCTGCCTGGGC
CATGGAATAATGAGATCTAAAGGTTTTCTGGATTCTTTGGCAATGTTAGTAGAGAGGCTTAGAAAAGAGGAGGCAGCACC
CACCCCACCACTTCAGAATTGGGGAAGGGACTCTGCAGTCTCTCTCAACCTCTGAGGTTAGACAAGCTGTTCCTGGGTAG
ACTGGCCAAATTAGGGAAACTGCTTCAAGCAATCTATGGAGATCATGCTAAGTAATTGTGAAAGCCTTGAAAAAAAGTGA
CCTTTTAAGAAAGGATCACTATTTATTTATAATTTATTTCCCTGAATAGATTTTATTTTGGTGGGGGTGTTGGTTCCCCC
CCCCCCAATCCATCCATCTGGTTAGAAACTGTCCCAAGGACCTATGGGGAGAGGGACTGTCCCCTTCTGCCTGGAGGCAG
TGTGGTGCTGGTCTGGGCCCACGCCACCCTGGTGAGAGTCCGGAAGGGCTTGGATACTGGGCTTTGCCGAGCTCCAGAGC
TCTGTGCACTCGCTCTCTGGGGCCCCACTGCCCTTTGCCGTTGAGCCTGTTCTGGGGGAAAGAGGAGAAGTTAGTACCCA
TGTCCTGCTAGGTCCCTCACGGTAATGGCTTTTGGAAGAGGACTCTTGTACCTGCTGACGGCCGCTGTCTGTGCGTCCAT
CCTTCCCTTCAGGCTGGCCATGGAGGCGACAATCACACAGACTCGTCTGTCCCTGTGCCTGGGAAGCCCGGCCTCTGGAC
GGACACCACCTCCCTCTGCTGCCCTGCTGGCTTTTGTAGAATTGGGGTGGAAGGGGAGAGGGAAAGAACTGTTGGTCCTT
CGGGGCCCCTGATCTTTCCTAAGACTAGCATAAAATTTCTGTCTGTCATTCTGTTTGTTGGGGGTGGAGGGACATTGGGG
TGCTGGCTGGGCCACTGTGTGAAGCAATGTGTGTCTAATTTAACGGATGTACCATTTTCTCTGCTAATTGAGAGAGCATT
ATTTATTTGTTTTGACACAAGTGCGTGCAGTGTTTCATCCCAGCTAATGGCTTCTTAAAGGTAATAAAACCCTTCAACCT
AATTGGTCAGATAAGACTTTTTCCTTGTATGCTTAAATAAAGCAATTAGTGAAACGCTTCAATCCAAAATGACTTTTTTT
TTGTCCTTTTTTTTTTTTTTTTTTTAAAAAAAAAGCTAATTTACTGTTACTGGAAACTTTTTGTACAATAAAGCAATCTC
CCAGATTGAAGAGC
1=============================Open Reading Frames===========================3534
========= ==== ==== ===== +1
===== == === +2
== +3
===== ====== ==== -3
=== == === -2
==== === ==== === == -1
========================= ESTScan(+)
================= framefinder(+)
________________________________________________________________________________
1==================================TC1598658================================3534
1 > 3 >
2 >
4 > < 22
5 > 18 > 42 >
6 > 24 >
7 > < 23
8 > 25 >
9 > 26 >
10 > 28 >
11 > 19 > < 74
12 > < 45
13 > 29 > 88 >
14 > 20 >
15 > < 30
16 > < 31
17 > < 37
21 > 44 >
27 > < 76
32 > 89 >
33a >
< 33b
34 >
< 35
36a > 83 >
....< 36b
< 38
< 39
40 >
41 >
43a >
.< 43b
46 >
47 >
< 48
< 49
50 >
51 >
52 >
< 53
< 54
< 55
56 >
57 >
58 >
59 >
60 >
61 >
62 >
63 >
64 >
< 65
66 >
67 >
< 68
< 69
70 >
71 >
72 >
73 >
75 >
77 >
78 >
79 >
80>
81 >
82>
84 >
85 >
86 >
87 >
# Src EST Id GB# Clone/Protein left right Library/Protein name
1 I02D A0988C11-5 CN676940 A0988C11 IMAGE 1 616 NIA Mouse Embryonic Stem (ES) cell (Lif+, 48 h, high density) cDNA library (Long
2 ETG NP712802 BC031395 BC031395 500 3404
3 ETG NP741217 AK017291 AK017291 1856 3534
4 GB 601808949F1 BF182573 4039573 1888 2482 NCI_CGAP_Mam5
5 I02D K0741B02-5N CA579694 K0741B02 IMAGE 1904 2313 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit-/Sca-1-) cDNA Library (Long)
6 GB UI-M-FI0-ceb-p-08- CB248234 6837465 1918 2566 NIH_BMAP_FI0
7 GB 602995289F1 BI250044 5150879 1924 2525 NCI_CGAP_Mam5
8 I051 2043-17 BG806938 1925 2508 Mouse E14.5 retina lambda ZAP II Library
9 GB AGENCOURT_8877900 CA976568 6437747 1954 2486 NCI_CGAP_Mam2
10 GB AGENCOURT_11297105 CB203334 30141198 1977 2618 NIH_MGC_135
11 I025 BY151709 BY151709 L930297E18 2021 2350 RIKEN full-length enriched, 17.5 days embryo whole body
12 GB 603277932F1 BI648462 5318262 2023 2847 NCI_CGAP_Mam3
13 I085 601086535F1 BE303540 3500553 2045 2641 NCI_CGAP_Mam6
14 I0C0 MBM09787 CX232417 2121 2323 Mus Musculus hematopoietic BM-HPC5 cDNA library
15 I0A9 AGENCOURT_16649560 CK030758 30787566 2254 2628 NIH_MGC_203
16 GB AGENCOURT_13011167 CB598367 30296301 2260 2627 NIH_MGC_178
17 I003 ua93f12.r1 AI019885 1365071 2324 2774 mammary gland, NbMMG
18 I003 vu54c01.r1 AA718078 1195200 2454 2816 mammary gland, NbMMG
19 I003 vx78e02.r1 AA874148 1281338 2541 3026 thymus (2NbMT)
20 ETG NP967562 BC065804 BC065804 2541 3404 Mus musculus cDNA clone IMAGE:1281338, partial cds
21 GB AGENCOURT_11261923 CB196148 30137910 2562 2797 NIH_MGC_135
22 GB 602117247T1 BF682137 3468490 2624 3349 mouse mammary gland NMLMG
23 GB 602987213F1 BI412628 5143371 2635 3420 NCI_CGAP_Lu33
24 ETG NP1219474 BC047206 BC047206 2660 3360 Mus musculus, clone IMAGE:5366316, mRNA
25 I0A9 AGENCOURT_16517940 CK021053 30786529 2665 3249 NIH_MGC_222
26 GB 603359449F1 BI736423 5366316 2674 3278 NIH_MGC_94
27 I003 ua42f03.r1 AA980549 1349405 2675 3056 mammary gland, NbMMG
28 GB UI-M-FY0-cey-a-11- CB524689 6843636 2717 3360 NIH_BMAP_FY0
29 I003 mx84e11.r1 AA397117 2737 3184
30 I02D C0196C07-3 AW545644 C0196C07 2760 3405 Mouse E7.5 Extraembryonic Portion cDNA Library
31 GB UI-M-HB0-cox-g-13- CO043511 30650940 2764 3404 NIH_BMAP_HB0
32 I003 mu51b09.r1 AA184860 642905 2796 3207 lymph node, NbMLN
33a I01B UI-M-AQ1-aed-g-11- BE653952 UI-M-AQ1-aed-g 2824 3194 NIH_BMAP_MHI_N
33b GB UI-M-AQ1-aed-g-11- CO038894 UI-M-AQ1-aed-g 2824 3404 NIH_BMAP_MHI_N
34 I025 BY412230 BY412230 I730089I19 2842 3359 RIKEN full-length enriched, TIB-55 BB88
35 I0BB BP771765 BP771765 mie25058 2855 3360 mouse (C57BL/6) pancreatic islet library with recombination-based method
36a GB mac35a03.y1 BG095326 4001572 2856 3143 spleen, 3NbMS
36b GB mac35a03.x1 BG228129 4001572 3070 3404 spleen, 3NbMS
37 I02D L0229D06-3 AW553605 L0229D06 2866 3520 Mouse Newborn Ovary cDNA Library
38 I02D C0156F08-3 AW542361 C0156F08 2869 3404 Mouse E7.5 Extraembryonic Portion cDNA Library
39 I02D C0156G06-3 AW542371 C0156G06 2870 3405 Mouse E7.5 Extraembryonic Portion cDNA Library
40 I025 BY543460 BY543460 F730039C08 2873 3360 RIKEN full-length enriched, B6-derived CD11 +ve dendritic cells
41 I025 BB758222 BB758222 G270094H05 2881 3404 RIKEN full-length enriched, melanocyte
42 GB 602989647F1 BI412623 5145779 2907 3361 NCI_CGAP_Lu33
43a GB ux13c11.y1 BF022949 3471380 2920 3255 thymus (2NbMT)
43b GB ux13c11.x1 BF020065 3471380 2953 3404 thymus (2NbMT)
44 I025 BY543195 BY543195 F730037B07 2930 3360 RIKEN full-length enriched, B6-derived CD11 +ve dendritic cells
45 GB maa43g09.x1 BF449925 3814072 2941 3362 NCI_CGAP_Brn63
46 I025 BY473852 BY473852 G270138N08 2957 3404 RIKEN full-length enriched, melanocyte
47 I025 BY546697 BY546697 F730114F19 2957 3341 RIKEN full-length enriched, B6-derived CD11 +ve dendritic cells
48 GB ux10h02.x1 BF318513 3471123 2961 3404 thymus (2NbMT)
49 I0A7 BX633799 BX633799 LIONp462D0794 2986 3418 pBluescript Lion
50 I025 BY692519 BY692519 I420023E11 2991 3404 RIKEN full-length enriched, osteoclast-like cell
51 I025 BY551285 BY551285 F730219M17 2992 3404 RIKEN full-length enriched, B6-derived CD11 +ve dendritic cells
52 I025 BY467300 BY467300 G270027E16 2995 3360 RIKEN full-length enriched, melanocyte
53 I02D K0741B02-3 BM246650 K0741B02 2996 3404 NIA Mouse Hematopoietic Stem Cell (Lin-/c-Kit-/Sca-1-) cDNA Library (Long)
54 I003 uk32f12.x1 AI648908 1970735 3007 3415 Sugano mouse kidney mkia
55 I0BB BP763202 BP763202 mic21030 3010 3520 mouse (C57BL/6) pancreatic islet library with recombination-based method
56 I025 BY655041 BY655041 K530321O08 3018 3417 RIKEN full-length enriched, visual cortex
57 I025 BY656970 BY656970 K530336J11 3020 3404 RIKEN full-length enriched, visual cortex
58 I025 BB733883 BB733883 F420004K10 3021 3404 RIKEN full-length enriched, 6 days neonate spleen
59 I025 BY521374 BY521374 F630008P07 3022 3359 RIKEN full-length enriched, NOD-derived CD11c +ve dendritic cells
60 I025 BY633429 BY633429 K430053M24 3022 3404 RIKEN full-length enriched, visual cortex
61 I025 BY534208 BY534208 F630228M02 3023 3404 RIKEN full-length enriched, NOD-derived CD11c +ve dendritic cells
62 I025 BY644645 BY644645 K530008E09 3031 3410 RIKEN full-length enriched, visual cortex
63 I025 BY642940 BY642940 K430354G10 3035 3404 RIKEN full-length enriched, visual cortex
64 I025 BY626139 BY626139 K430008K13 3043 3409 RIKEN full-length enriched, visual cortex
65 I02D H3136F01-3 BG074558 H3136F01 3045 3520 NIA Mouse 15K cDNA Clone Set
66 I025 BY671340 BY671340 K820019C14 3049 3404 RIKEN full-length enriched, 14.5 days embryo df/df Rathke's pouches
67 I025 BY641172 BY641172 K430343B07 3056 3404 RIKEN full-length enriched, visual cortex
68 GB mab53b03.x1 BG147700 3973949 3058 3407 Soares_NMEBA_branchial_arch
69 GB mab07f05.x1 BF715419 3825561 3083 3520 thymus (2NbMT)
70 I025 BB155303 BB155303 A130024H22 3087 3359 RIKEN full-length enriched, 16 days neonate thymus
71 GB UI-M-FI0-cdy-n-24- CB247176 6836281 3093 3404 NIH_BMAP_FI0
72 I025 BY686594 BY686594 I320017P18 3095 3520 RIKEN full-length enriched, stroma cell
73 I025 BY435070 BY435070 I920136K02 3114 3520 RIKEN full-length enriched, 16 days embryo kidney
74 I02D L0901B07-3 BG060236 L0901B07 IMAGE 3115 3404 NIA Mouse Newborn Kidney cDNA Library (Long)
75 GB UI-M-FY0-cfo-d-10- CD348857 6853691 3139 3520 NIH_BMAP_FY0
76 I01B UI-M-AQ1-aed-g-06- AI842648 UI-M-AQ1-aed-g 3148 3405 NIH_BMAP_MHI_N
77 I025 AV343686 AV343686 6430539C05 3163 3413 RIKEN full-length enriched, adult male olfactory brain
78 I025 AV315580 AV315580 5830431F12 3169 3405 RIKEN full-length enriched, adult male thymus
79 I003 lai08d07.y1 CK377773 3180 3404 Gastric Epithelial Progenitor 2
80 I003 laa99g09.y1 CD537051 3181 3359 Colon epithelia progenitors cDNA
81 I025 AV315794 AV315794 5830432H24 3189 3405 RIKEN full-length enriched, adult male thymus
82 I025 BB462304 BB462304 D130075M14 3205 3404 RIKEN full-length enriched, 12 days embryo spinal ganglion
83 I025 BB321514 BB321514 B230398P16 3234 3532 RIKEN full-length enriched, adult male corpora quadrigemina
84 I025 BB225787 BB225787 A530094A08 3256 3520 RIKEN full-length enriched, adult male aorta and vein
85 I025 AV239442 AV239442 4732434F03 3264 3520 RIKEN full-length enriched, 10 day neonate skin
86 I025 AV236269 AV236269 4732410G10 3265 3520 RIKEN full-length enriched, 10 day neonate skin
87 I025 BB309766 BB309766 B230312D12 3272 3517 RIKEN full-length enriched, adult male corpora quadrigemina
88 I025 BB296972 BB296972 B130051C04 3307 3532 RIKEN full-length enriched, 9.5 days embryo parthenogenote
89 I025 BB073889 BB073889 9330004D21 3317 3520 RIKEN full-length enriched, adult male diencephalon
Sequence source codes:
GB GenBank, GenBank
I0A9 National Cancer Institute / NIH, Office of Cancer Genomics
I003 Washington University School of MedicineP, WashU-HHMI Mouse EST Project
I0A7 RZPD Deutsches Ressourcenzentrum fuer Genomforschung GmbH,
I01B National Institute of Mental Health,
I025 The Institute of Physical and Chemical Research (RIKEN), Laboratory for Genome Exploration Research Group, RIKEN Genomic Sciences Center(GSC), Yokohama Institute
I0C0 Institution of Biotechnology, Molecular Biotechnology
I02D National Institute on Aging/National Institutes of Health, Laboratory of Genetics
I085 Lawrence Livermore National Laboratory, The I.M.A.G.E. Consortium
I051 The University of Texas MD Anderson Cancer Center, Experimential Radiation Oncology
I0BB Kobe University Graduate School of Medicine, Division of Cellular and Molecular Medicine
ETGB Expressed Transcripts from GenBank
TC sequence strand: coding strand |
Evidence for coding strand | Evidence for reverse complement |
Inconclusive evidence |
|---|
| ESTs | 5' ESTs | (used as +) | 31 | (used as -) | 1 |
(5'/3' source not known) |
|---|
| 3' ESTs | (used as -) |
21 | (used as +) | 34 |
| total | 52 |
35 | 3 | | Expressed transcripts | 2 | - | |
|---|
| Predicted genes | - | - |
|---|
| Protein hits | 5 | - |
|---|
| Trimmed polyA/T | 10 | - |
|---|
Tentative Annotation: UP|STX16_MOUSE (Q8BVI5) Syntaxin-16, partial (78%)
Similarity search results: | Description | Hit coverage | % ID | % Sim | Seq Left | Seq Right | Hit Left | Hit Right |
| UP|STX16_MOUSE (Q8BVI5) Syntaxin-16 | partial (78%) | 99.22 | 100.00 | 2 | 768 | 16 | 326 |
| homologue to UP|Q5REA9_PONPY (Q5REA9) Hypothetical protein DKFZp459J1550 | partial (78%) | 94.12 | 96.86 | 2 | 768 | 16 | 325 |
| homologue to UP|STX16_HUMAN (O14662) Syntaxin-16 (Syn16) | partial (78%) | 93.33 | 96.08 | 2 | 768 | 16 | 325 |
| homologue to RF|XP_853504.1|73992374|XM_848411 similar to syntaxin 16 isoform a isoform 2 {Canis familiaris} (exp=-1; wgp=0; cg=0) | partial (78%) | 92.91 | 96.85 | 2 | 765 | 16 | 325 |
| homologue to SP|O14662 Syntaxin-16 (Syn16). {Homo sapiens} (exp=-1; wgp=-1; cg=-1) | partial (79%) | 92.94 | 96.08 | 2 | 768 | 16 | 324 |
Clone links to other TCs:
Maps to :
| Genome | Chromosome | End5 | End3 | Score | Show genomic alignment with: |
|---|
| Mouse genome |
chr2 |
173,720,041 |
173,742,709 |
3459 |
 |
 |
 |
| Rat genome |
chr3 |
164,995,239 |
165,023,727 |
2068 |
|
|
|
| Human genome |
chr20 |
56,660,513 |
56,687,961 |
1108 |
|
|
|
| Chimp genome |
chr20 |
56,362,183 |
56,389,710 |
1104 |
|
|
|
| Rhesus macaque genome |
chr10 |
5,848,111 |
5,875,875 |
1078 |
|
|
|
| Cattle genome |
chr13 |
38,114,176 |
38,139,393 |
865 |
|
|
|
Comments and suggestions : Contact Us
| Acknowledgements |
|---|
 |
The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416. |
|
