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The DFCI Mus musculus Gene Index (MGI)
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MGI TC Report: |
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EST IDs are linked to MGI EST reports. ET# s are linked to
qcGene
reports. GB#s are linked to
GenBank
accessions.
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>TC1621663 TC370824 TC481091 TC551745 TC1141545 TC1315872 TC1544789
TGGGAGCCGCGGAGTCTCCAGCGCCCCTGAGCAGATCCCACTCTCCCGGGCGCTGCTACTCACACAGGCTTCCAGCCGCC
ACGGGGCGTCCTCTGTCTGCGGCAGCAGCGGCGGCGCGAGCGGAGGCTGCAGTCTAGCCGGGTCTGGCTGCTCGGCGCCC
TGGACAGAGTCCGGCAGAAGCGCGATCGGGAGGAGACGCCGAGGCAAGGAGGAGCCGCGCCGCGCCCGGCGCTCGCTTGC
CTCGAATCCCCGCACCGCGGCCCCAGGTCCTTGACAGCCAACATGATAAAGTATTGACAATACGCGGAGGAGAGAGAGAG
AGACTCACATCGCTCAGACTGTGAGTCCCAGAAGTTGATGACCTTGTTTGGTGATTGGGGGTGGAAGGAAGAACAGACCC
CATGTGAGTAAGTAATTGAACGCCGGGGAGTTTTCTAGTCTTGGATTCTGGCTTTTCTTGTTTTTTGTTTGTTTGTTTGT
TTTGTTATGTTTTGTTATTCATTCATTCATTTATTTGATGAAGGTTTGGGATAGACAGATAGGCAATGACAGGTGGTGGC
AGGAACCCCTTACTTCAGTAACTCACTTGCTCTAAGATGAGTGACAGCTAACCACAAAGCACAGAGACCTCAGGGAAGTG
AGCAGGACACACATGCCACTTAGCCACCCACACATGTAATTCTCCGCCCGGTCAAGAATAAAGCACAGACTCCCGGAGTG
GTGACCCGGGGGAAGGTAGTATTATGAGTGTTCATTGAAAACATTTAACTCAAAATGAAGAATTTGACTGTGAAAACAAG
CTCAGCGTATATAATCATAAAACATAACACACAAATAAACACTGCATGGGTTTTATTTTGAAGACGATACTCGGTTCCAG
TGTGGATGTGGCTCTGTGTCCCTGAATAATTTTCAGATTGGACATTGTACAAAACGCTTTTCCATCTCTCTACAGACTCA
CATTCTCGTTTTGGTTCCCAATATTCTCGTAGTTTGTGAACTAGAGGGGGGATACACAAGCGACCCAAGGTGCCAGGGAG
ACAAGTACATCTTTGTTCAAGCTGGGAAAGGTACCAGGCTTATCTGGCTTCCTCTGTCCCAGGAAGGAGGTATGCTGAAG
CTCGCTAGTTGGTTGCCGAGGGTATGTAAGTTTGCTTTACAGGTTTACCCATGGTGGCATTTCCCACTCTGAAAGAGGGC
ATCGTGCTGCCGGGAGCTGCAATCTTGTCATGTGGATTTTAGCAGTATGCTCTAAGAGAAAATAAAGTAAAAGCTATGGG
TAAGAGGATTTGCATTATGGTGTTAATGAAACTGGTAACAGTGTAGAAACTTAAGTGTCCTCACATAAAGGAATGTTCGG
ATAAATTATGGCCCCTTCTAAGGTACAGTGCTGTTGTAACCACGAAGACAAGCTTTTAAAGGCCATTTAACAAAATGGGG
AAGCAGATTATCATAAGTGAATAAAGCAAAGGTTTCCCAATTATATTTATGATATGAGCCCATTTTATAAAGAGAAAACA
ATTGCTGAGGGAGAGCCTGGAGCAAAGTACCCCTTCCACAGGACCAATGGTCATAGCTGGGTGAAACCTGTAGTAACAGT
TTTGGATGACATTCGAAGTAACATTTTTTGTGTGTTTGTTATTTTCTTCTGTAAATACTGTCCAGTGAGCAAATATTAGG
AGATTTTACACATGTATCCCCACAGCTCCTTAGCACTCCAACAAAAGTTCACAACTAAGTAATATTTTGCCTCCATACAT
ATGAGTTTTCTTGTAAAGCTGGACCTTCAGGTTTTTGATTGAAAACCCTGGAGGCTGGATGAGCAGTGGGATGCTTTCCC
TGGGAGAGTCTGTTTCCATCGTATTCCTTAACACAGTAGCAACCCCTACTTTTACCAGTGTTGTTCCTGTCTTGTTCACT
GAATGCCTGGTTTGTGCCAGTGTTGAGTCATATTGAAGGACCAGACAGGCAAGCCCGAGGGACTAAGATGTGATCTAGTG
AAGGGTGAGGGCGACACAGAGGCGAGTAGACTTCTCTTGCTGTTGACTGTCCAGTGTCTCAAATGGACTTCCTGGAGCCT
CTAAGATGATGCCCATGGTAGGAGGACACTGGCAGCTTCTTTGAGCTAATGTTAGTACTACGCTGTCCACCCTTCATTCA
AATACAAAACAGACAAAAAGCAGCATAGGCTCAGAGGGAAATAGGGAGGCGTGGAAGTAATCCTGGTAAAATGTGACAAG
TGTAAAGAATTTCTCAAAAACCTAATACAGCATGTTGTAGATAGAGTTAATTAAAAGAAGATAGCTGGAGTCAGAATCAA
ATTCTCCTCTTAGATCGAACAGTTGGTGTCGTAGATTTTTTTGTGAGTGAAGGGGACTCCGAAAAGCTCACTAGCAGCTT
TCAAATTAAATAAATGGGGCAACTAATCAAAGAAGGAAGCATCTACTAGACACTCACTTATACACTCAATTACTTTTTAT
TTATGCTTCAGCTTCCTGTTAGAATTTCTTAAATTGGCTGTGAAGTGGCTGATGTGCAGCCTTTATAACCTGGACAGATC
TGGTGTGAAGGGAAAATAAGTGGCAGCATGCAGCTTCTTAGAGTGGAACCCGTTAGCATGTGGCGATGTCGAATCTGCAG
AAATAACTGGTTCAATGGAAATGTAAAGGCCAATTAGTGCGTCTATGAAAATCAATTAGTTAACAACTATCAAAATTAAA
AACATATATCTCCAGGTTATTATAGATGGGCCTTGCCAATTTTTCTCACTGGGGACCACTAAAAACCTGTATAGACCAAA
CAAATGAACATTCGTATGCCAGCGAACAGAATGAATGCTCAAGAGCACTGGGGGATTACCTCACGGGGAGTTCCCAGGGA
TCTGCTGGCTCTGACAGTGATGCTGAAGACCTTTGCTTCATCTGGGGCCACAAGCTTGAGACTGCCAGTTAACCTGAACC
GGATCAACACAGATAAACCTACACCAAGAAGTTAGGGTCGAACAGAAGAAGAAGGAGGAGGAAGAGGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
1=============================Open Reading Frames===========================3078
==== ====== +1
======= ===== +2
==== ===== +3
======= === ==== -3
===== === ==== ==== == -2
=== === -1
============================= ESTScan(-)
= framefinder(+)
________________________________________________________________________________
1==================================TC1621663================================3078
1 >
2 >
3 >
# Src EST Id GB# Clone/Protein left right Library/Protein name
1 I025 BB623047 BB623047 6530402A05 1 615 RIKEN full-length enriched, 10 days neonate cerebellum
2 I025 BB624762 BB624762 9030018D02 1 630 RIKEN full-length enriched, adult male colon
3 ETG NP721518 AK078337 AK078337 1 3078
Sequence source codes:
I025 The Institute of Physical and Chemical Research (RIKEN), Laboratory for Genome Exploration Research Group, RIKEN Genomic Sciences Center(GSC), Yokohama Institute
ETGB Expressed Transcripts from GenBank
TC sequence strand: coding strand
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Evidence for coding strand | Evidence for reverse complement |
Inconclusive evidence |
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| ESTs | 5' ESTs | (used as +) | 2 | (used as -) | - |
(5'/3' source not known) |
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| 3' ESTs | (used as -) |
- | (used as +) | - |
| total | 2 |
- | 1 |
| Expressed transcripts | - | - | |
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| Predicted genes | - | - |
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| Protein hits | - | - |
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| Trimmed polyA/T | - | - |
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Tentative Annotation:
similar to UP|Q7TP46_RAT
(Q7TP46) Ab2-379,
partial (4%)
Similarity search results:
| Description | Hit coverage | % ID | % Sim | Seq Left | Seq Right | Hit Left | Hit Right |
| homologue to UP|Q6EPW4_ORYSA (Q6EPW4) Hypothetical protein B1136H02.30 (Hypothetical protein OJ1112_G07.17) | partial (15%) | 90.91 | 100.00 | 3013 | 3078 | 104 | 125 |
| homologue to UP|Q7RPR6_PLAYO (Q7RPR6) Eukaryotic ribosomal protein L18 putative | partial ( 8%) | 90.00 | 90.00 | 3077 | 3018 | 22 | 41 |
| similar to UP|Q7TP46_RAT (Q7TP46) Ab2-379 | partial ( 4%) | 79.17 | 91.67 | 3003 | 3074 | 434 | 457 |
| similar to UP|Q554B2_DICDI (Q554B2) Hypothetical protein | partial (30%) | 77.27 | 81.82 | 3077 | 3012 | 28 | 49 |
| homologue to UP|Q8VIB7_MESAU (Q8VIB7) Attractin | partial ( 2%) | 91.30 | 91.30 | 3066 | 2941 | 61 | 139 |
Maps to :
| Genome | Chromosome | End5 | End3 | Score | Show genomic alignment with: |
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| Mouse genome |
chr14 |
75,890,932 |
76,048,954 |
3005 |
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| Rat genome |
chr15 |
58,191,928 |
58,194,059 |
729 |
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Comments and suggestions : Contact Us
| Acknowledgements |
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The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416. |
