The DFCI Mus musculus Gene Index (MGI)
MGI TC Report:
EST IDs are linked to MGI EST reports. ET# s are linked to qcGene reports. GB#s are linked to GenBank accessions. 

>TC1702152 
AGGGGGGCCCCAGGGGCCCCAAAATGTGCAGGCGCTTGAAACACCAGTTGAAGGAAGCAAGCACAGACTGCCTGCCGGAG
AGCAGCCTGGTAACCCACTAAAACCCGCACCTGGGCGCAGAACAAAAGGGCCCCTTGAAAACAGCCCCTGCCCTGCGGTC
CGATGAGCTCAGACTCGGGCGGGGCCCAATGACCGTGGACAGCAGCATGAGCAGCGGGTACTGCAGCCTGGACGAGGAAC
TGGAAGATTGCTTCTTTACGGCTAAGACCACCTTCTTCAGGAATCTTCAGAGCAAACAGCCTTCAAAGAATGTCTGTAAG
GCAGTGGAGGAGACACAGCACCCGCCCACGATACAGGAGATCAAGCAGAAGATTGACAGCTATAACAGCAGGGAGAAGCA
CTGCCTGGGCATGAAGCTGAGTGAAGATGGCACCTACACAGGTTTCATCAAAGTGCATTTGAAGCTCCGACGGCCAGTGA
CGGTGCCCGCTGGGATCCGGCCCCAGTCCATCTATGATGCCATTAAGGAAGTGAACCCTGCAGCCACCACAGACAAGCGG
ACTTCCTTCTACCTGCCACTCGATGCCATCAAGCAGCTACATATCAGCAGCACCACCACGGTTAGTGAGGTCATCCAGGG
GCTGCTCAAGAAGTTCATGGTTGTGGACAACCCACAGAAGTTTGCACTTTTTAAGCGGATACACAAAGATGGACAAGTGC
TCTTCCAGAAACTCTCCATTGCTGACTATCCTCTCTACCTTCGTCTGCTCGCTGGGCCTGACACCGATGTTCTCAGCTTT
GTGCTAAAGGAGAATGAAACTGGAGAGGTGGAGTGGGATGCCTTTTCCATTCCTGAACTCCAGAACTTTTTAACTATCCT
GGAAAAAGAGGAGCAGGACAAGATCCATCAACTGCAAAAGAAGTACAACAAATTCCGTCAGAAACTGGAAGAGGCATTAC
GAGAGTCCCAAGGGAAGCCGGGGTAAC
1=============================Open Reading Frames============================987

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 ===============================================================================  ESTScan(+)
                                                                                  
          ====================================================================    framefinder(+)
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1==================================TC1702152=================================987
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 #  Src  EST Id              GB#           Clone/Protein   left  right Library/Protein name
                                                                                                                                                             
 1  I025 BY182660            BY182660      F630103C11          1   359 RIKEN full-length enriched, NOD-derived CD11c +ve dendritic cells
 2  I025 BY178375            BY178375      F630029G11          3   326 RIKEN full-length enriched, NOD-derived CD11c +ve dendritic cells
 3  I025 BY184351            BY184351      F630113G15          3   324 RIKEN full-length enriched, NOD-derived CD11c +ve dendritic cells
 4  I025 BY190786            BY190786      F630315P17         26   337 RIKEN full-length enriched, NOD-derived CD11c +ve dendritic cells
 5  I025 BY209737            BY209737      F730311H05         26   391 RIKEN full-length enriched, B6-derived CD11 +ve dendritic cells
 6  I025 BY336714            BY336714      L230002M08         34   356 RIKEN full-length enriched, whole joints
 7  I025 BY219699            BY219699      F830116L07         36   380 RIKEN full-length enriched, activated spleen
 8  I025 BY012574            BY012574      G730033M24         46   404 RIKEN full-length enriched, lung RCB-0558 LLC cDNA
 9  I025 BY183886            BY183886      F630111A03         46   404 RIKEN full-length enriched, NOD-derived CD11c +ve dendritic cells
10  I025 BY201812            BY201812      F730108N16         46   455 RIKEN full-length enriched, B6-derived CD11 +ve dendritic cells
11  I025 BY213961            BY213961      F830026H23         46   388 RIKEN full-length enriched, activated spleen
12  I025 BY181437            BY181437      F630046I07         50   359 RIKEN full-length enriched, NOD-derived CD11c +ve dendritic cells
13  ETG  NP827711            AY261333      AAP83361           87   987 Rap1-binding protein [Mus musculus]
14  I003 uq14a05.y1          AW822655      2802416           104   581 Ren Stubbs mouse thymus
15  I025 BY338801            BY338801      L230017L19        195   531 RIKEN full-length enriched, whole joints
16  I09B S25-21172           DT902301                        219   532 Hematopoietic stem cells



Sequence source codes:

I003 Washington University School of MedicineP, WashU-HHMI Mouse EST Project
I09B Princeton University, Department of Molecular Biology
I025 The Institute of Physical and Chemical Research (RIKEN), Laboratory for Genome Exploration Research Group, RIKEN Genomic Sciences Center(GSC), Yokohama Institute
ETGB Expressed Transcripts from GenBank

TC sequence strand: coding strand

Evidence for coding strandEvidence for reverse complement Inconclusive evidence
ESTs5' ESTs (used as +) 14 (used as -) - (5'/3' source not known)
3' ESTs (used as -) - (used as +) -
total14 - 1
Expressed transcripts1 -  
Predicted genes- -
Protein hits5 -
Trimmed polyA/T- -

Tentative Annotation:
homologue to GB|CAI13542.1|55961053|AL591846 Ras association (RalGDS\/AF-6) domain family 5 {Homo sapiens} (exp=0; wgp=1; cg=0), complete

Similarity search results:

DescriptionHit coverage% ID% SimSeq LeftSeq RightHit LeftHit Right
UP|Q6KAR0_MOUSE (Q6KAR0) MFLJ00186 protein (Fragment)complete 100.00 100.001059831293
UP|Q8C2E8_MOUSE (Q8C2E8) 2 days neonate thymus thymic cells cDNA RIKEN full-length enriched library clone:complete 100.00 100.001899831265
homologue to GB|CAI13542 Ras association (RalGDS\/AF-6) domain family 5 {Homo sapiens} (exp=0; wgp=1; cg=0)complete 94.72 96.981899831265
similar to RF|XP_589261.2|76636810|XM_589261 similar to Ras association (RalGDS/AF-6) domain family 5 isoform C {Bos taurus}complete 89.39 95.831899801264
UP|Q5EBH1_MOUSE (Q5EBH1) Ras association (RalGDS/AF-6) domain family 5partial (54%) 100.00 100.00309983189413

Clone links to other TCs:
EST Orientation Linked EST Linked EST Orientation Linked TC #
AW822655 5' AW822261 3' TC1578055
BY181437 5' BY525448 3' TC1578055
BY182660 5' BY526493 3' TC1578055
BY184351 5' BY528207 3' TC1578055
BY190786 5' BY537186 3' TC1578055
BY201812 5' BY546104 3' TC1578055

GO annotation

GO idGO termEC#TypeGOpep link%sim%cov
GO:0005515protein binding-MMGI|MGI:1926375 9754
GO:0005554molecular function unknown-MMGI|MGI:2179722 7956
GO:0008372cellular component unknown-CMGI|MGI:2179722 7956
GO:0007218neuropeptide signaling pathway-BMGI|MGI:2179722 7956
GO:0007242intracellular signaling cascade-BMGI|MGI:1926375 9754

TC1702152 belongs to genome cluster :
Genome Cluster GC396
Maps to :
GenomeChromosomeEnd5End3ScoreShow genomic alignment with:
Mouse genome chr1 133,006,070 133,027,706 956
Rat genome chr13 44,124,420 44,145,305 792
Human genome chr1 204,797,337 204,826,934 563
Rhesus macaque genome chr1 163,777,289 163,807,437 543
Chimp genome chr1 186,952,757 186,981,110 485
Cattle genome chr16 3,076,085 3,104,499 464
Chicken genome chr26 1,077,021 1,083,197 201
Zebrafish genome chr11 23,993,422 23,994,476 110
Tetraodon genome chr11 8,888,542 8,889,619 80

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Acknowledgements
   The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.