| Species | # of sequences |
| A.aegypti (Aedes aegypti) | 4195 |
| A.cepa (Allium cepa) | 3153 |
| A.variegatum (Amblyomma variegatum) | 284 |
| Mosquito (Anopheles gambiae) | 6825 |
| Honeybee (Apis mellifera) | 976 |
| Arabidopsis (Arabidopsis thaliana) | 16626 |
| A.flavus (Aspergillus flavus) | 1530 |
| A.nidulans (Aspergillus nidulans) | 3720 |
| A.burtoni (Astatotilapia burtoni) | 263 |
| Snail (Biomphalaria glabrata) | 77 |
| B.microplus (Boophilus microplus) | 1416 |
| Cattle (Bos taurus) | 26687 |
| Oilseed_rape (Brassica napus) | 6484 |
| B.malayi (Brugia malayi) | 585 |
| C.elegans (Caenorhabditis elegans) | 3515 |
| Dog (Canis familiaris) | 16861 |
| Pepper (Capsicum annuum) | 3406 |
| C.reinhardtii (Chlamydomonas reinhardtii) | 1712 |
| C.intestinalis (Ciona intestinalis) | 5571 |
| C.posadasii (Coccidioides posadasii) | 2508 |
| C.parvum (Cryptosporidium parvum) | 681 |
| Zebrafish (Danio rerio) | 16024 |
| D.discoideum (Dictyostelium discoideum) | 1593 |
| Drosophila (Drosophila melanogaster) | 6729 |
| E.tenella (Eimeria tenella) | 306 |
| Cryptococcus (Filobasidiella neoformans) | 674 |
| Killifish (Fundulus heteroclitus) | 2973 |
| F.verticillioides (Fusarium verticillioides) | 3213 |
| Chicken (Gallus gallus) | 19900 |
| Tsetse (Glossina morsitans) | 1612 |
| Soybean (Glycine max) | 15141 |
| Cotton (Gossypium) | 9863 |
| H.chilotes (Haplochromis chilotes) | 884 |
| H.red_tail_sheller (Haplochromis sp. 'red tai) | 942 |
| Sunflower (Helianthus annuus) | 6762 |
| Human (Homo sapiens) | 31595 |
| Barley (Hordeum vulgare) | 14301 |
| Catfish (Ictalurus) | 2551 |
| Lettuce (Lactuca sativa) | 5327 |
| Leishmania (Leishmania) | 587 |
| L.japonicus (Lotus japonicus) | 7370 |
| Tomato (Lycopersicon esculentum) | 13110 |
| M.grisea (Magnaporthe grisea) | 3917 |
| Medicago (Medicago truncatula) | 11692 |
| Ice_plant (Mesembryanthemum crystall) | 2200 |
| Mouse (Mus musculus) | 27826 |
| N.caninum (Neospora caninum) | 372 |
| N.crassa (Neurospora crassa) | 3958 |
| N.benthamiana (Nicotiana benthamiana) | 2863 |
| Tobacco (Nicotiana tabacum) | 7320 |
| O.volvulus (Onchocerca volvulus) | 398 |
| R.trout (Oncorhynchus mykiss) | 12010 |
| Rice (Oryza sativa) | 21441 |
| o.s.indica (Oryza sativa indica) | 8279 |
| Medaka (Oryzias latipes) | 8684 |
| Petunia (Petunia hybrida) | 1247 |
| Spruce (Picea) | 10605 |
| Pine (Pinus) | 7471 |
| P.berghei (Plasmodium berghei) | 485 |
| P.falciparum (Plasmodium falciparum) | 1201 |
| P.vivax (Plasmodium vivax) | 719 |
| P.yoelii (Plasmodium yoelii) | 1319 |
| Poplar (Populus) | 17846 |
| Rat (Rattus norvegicus) | 24385 |
| R.appendiculatus (Rhipicephalus appendicula) | 1133 |
| S.cerevisiae (Saccharomyes cerevisiae) | 1615 |
| S.officinarum (Saccharum officinarum) | 14296 |
| A.salmon (Salmo salar) | 10767 |
| S.neurona (Sarcocystis neurona) | 208 |
| S.mansoni (Schistosoma mansoni) | 2339 |
| S.pombe (Schizosaccharomyces pombe) | 1871 |
| S.cereale (Secale cereale) | 1172 |
| Potato (Solanum tuberosum) | 15585 |
| Sorghum (Sorghum bicolor) | 13064 |
| Clam (Spisula solidissima) | 1356 |
| Pig (Sus scrofa) | 23105 |
| Fugu (Takifugu) | 2268 |
| T.thermophila (Tetrahymena thermophila) | 675 |
| T.parva (Theileria parva) | 256 |
| Cocoa (Theobroma cacao) | 592 |
| T.gondii (Toxoplasma gondii) | 957 |
| T.vaginalis (Trichomonas vaginalis) | 425 |
| Wheat (Triticum aestivum) | 17890 |
| T.brucei (Trypanosoma brucei) | 358 |
| T.cruzi (Trypanosoma cruzi) | 369 |
| Grape (Vitis vinifera) | 10249 |
| Frog (Xenopus laevis) | 14403 |
| X.tropicalis (Xenopus tropicalis) | 17238 |
| Maize (Zea mays) | 21772 |
| Total: | 618733 |