EGO General Release Notes


  • Current Release - Version 13, Released Dec 2006
  • Current orth_id range = (965977-1176615)
  • Number of ortholog sequences from different species
    Species# of sequences
    A.aegypti (Aedes aegypti)4195
    A.cepa (Allium cepa)3153
    A.variegatum (Amblyomma variegatum)284
    Mosquito (Anopheles gambiae)6825
    Honeybee (Apis mellifera)976
    Arabidopsis (Arabidopsis thaliana)16626
    A.flavus (Aspergillus flavus)1530
    A.nidulans (Aspergillus nidulans)3720
    A.burtoni (Astatotilapia burtoni)263
    Snail (Biomphalaria glabrata)77
    B.microplus (Boophilus microplus)1416
    Cattle (Bos taurus)26687
    Oilseed_rape (Brassica napus)6484
    B.malayi (Brugia malayi)585
    C.elegans (Caenorhabditis elegans)3515
    Dog (Canis familiaris)16861
    Pepper (Capsicum annuum)3406
    C.reinhardtii (Chlamydomonas reinhardtii)1712
    C.intestinalis (Ciona intestinalis)5571
    C.posadasii (Coccidioides posadasii)2508
    C.parvum (Cryptosporidium parvum)681
    Zebrafish (Danio rerio)16024
    D.discoideum (Dictyostelium discoideum)1593
    Drosophila (Drosophila melanogaster)6729
    E.tenella (Eimeria tenella)306
    Cryptococcus (Filobasidiella neoformans)674
    Killifish (Fundulus heteroclitus)2973
    F.verticillioides (Fusarium verticillioides)3213
    Chicken (Gallus gallus)19900
    Tsetse (Glossina morsitans)1612
    Soybean (Glycine max)15141
    Cotton (Gossypium)9863
    H.chilotes (Haplochromis chilotes)884
    H.red_tail_sheller (Haplochromis sp. 'red tai)942
    Sunflower (Helianthus annuus)6762
    Human (Homo sapiens)31595
    Barley (Hordeum vulgare)14301
    Catfish (Ictalurus)2551
    Lettuce (Lactuca sativa)5327
    Leishmania (Leishmania)587
    L.japonicus (Lotus japonicus)7370
    Tomato (Lycopersicon esculentum)13110
    M.grisea (Magnaporthe grisea)3917
    Medicago (Medicago truncatula)11692
    Ice_plant (Mesembryanthemum crystall)2200
    Mouse (Mus musculus)27826
    N.caninum (Neospora caninum)372
    N.crassa (Neurospora crassa)3958
    N.benthamiana (Nicotiana benthamiana)2863
    Tobacco (Nicotiana tabacum)7320
    O.volvulus (Onchocerca volvulus)398
    R.trout (Oncorhynchus mykiss)12010
    Rice (Oryza sativa)21441
    o.s.indica (Oryza sativa indica)8279
    Medaka (Oryzias latipes)8684
    Petunia (Petunia hybrida)1247
    Spruce (Picea)10605
    Pine (Pinus)7471
    P.berghei (Plasmodium berghei)485
    P.falciparum (Plasmodium falciparum)1201
    P.vivax (Plasmodium vivax)719
    P.yoelii (Plasmodium yoelii)1319
    Poplar (Populus)17846
    Rat (Rattus norvegicus)24385
    R.appendiculatus (Rhipicephalus appendicula)1133
    S.cerevisiae (Saccharomyes cerevisiae)1615
    S.officinarum (Saccharum officinarum)14296
    A.salmon (Salmo salar)10767
    S.neurona (Sarcocystis neurona)208
    S.mansoni (Schistosoma mansoni)2339
    S.pombe (Schizosaccharomyces pombe)1871
    S.cereale (Secale cereale)1172
    Potato (Solanum tuberosum)15585
    Sorghum (Sorghum bicolor)13064
    Clam (Spisula solidissima)1356
    Pig (Sus scrofa)23105
    Fugu (Takifugu)2268
    T.thermophila (Tetrahymena thermophila)675
    T.parva (Theileria parva)256
    Cocoa (Theobroma cacao)592
    T.gondii (Toxoplasma gondii)957
    T.vaginalis (Trichomonas vaginalis)425
    Wheat (Triticum aestivum)17890
    T.brucei (Trypanosoma brucei)358
    T.cruzi (Trypanosoma cruzi)369
    Grape (Vitis vinifera)10249
    Frog (Xenopus laevis)14403
    X.tropicalis (Xenopus tropicalis)17238
    Maize (Zea mays)21772
    Total:618733
  • (Number of ortholog sequences/cluster) distribution for the current release:
    # of sequencesclusters count
    340853
    432724
    528883
    619053
    712593
    89374
    97592
    106710
    115828
    125135
    134536
    143868
    153351
    162807
    172512
    182175
    191887
    201714
    211519
    221358
    231296
    241136
    25990
    26839
    27828
    28723
    29694
    30638
    31589
    32544
    33553
    34436
    35381
    36405
    37369
    38354
    39352
    40307
    41292
    42277
    43237
    44232
    45232
    46185
    47216
    48173
    49163
    50182
    51149
    52147
    53141
    54138
    55113
    56124
    57100
    58110
    59107
    6088
    6194
    6268
    6355
    6465
    6566
    6651
    6756
    6857
    6958
    7059
    7159
    7245
    7334
    7435
    7533
    7638
    7729
    7825
    7923
    8035
    8122
    8228
    8316
    8419
    8510
    8618
    8712
    889
    8911
    9010
    919
    928
    9311
    947
    959
    9611
    974
    984
    997
    1002
    1014
    1026
    1037
    1044
    1053
    1064
    1076
    1084
    1092
    1103
    1114
    1123
    1136
    1142
    1156
    1164
    1183
    1192
    1201
    1211
    1226
    1231
    1246
    1253
    1262
    1281
    1292
    1301
    1312
    1322
    1332
    1362
    1381
    1421
    1431
    1451
    1511
    1551
    1611
    1621
    1641
    1741
    Total:210639

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    Acknowledgements
       The Gene Index Project is supported in part by funding from the US National Science Foundation through grant #DBI-0552416.