MEME

MEME - Motif discovery tool

MEME version 3.0 (Release date: 2002/04/02 00:11:59)

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.sdsc.edu.

This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.sdsc.edu.

REFERENCE

If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.

TRAINING SET

DATAFILE= /local/tgi/jtsai/NORM/UPSTREAM/ratgenes/upstream_2k.all.fa
ALPHABET= ACGT
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
upstream_TC402123        1.0000   2000  upstream_TC384482        1.0000   2000  
upstream_TC385242        1.0000   2000  upstream_TC373575        1.0000   2000  
upstream_TC362800        1.0000   2000  upstream_TC387521        1.0000   2000  
upstream_TC386900        1.0000   2000  upstream_TC392468        1.0000   2000  
upstream_TC370838        1.0000   2000  upstream_TC388418        1.0000   2000  
upstream_TC365371        1.0000   2000  upstream_TC362834        1.0000   2000  
upstream_TC364953        1.0000   2000  upstream_TC370155        1.0000   2000  
upstream_TC362030        1.0000   2000  upstream_TC393047        1.0000   2000  
upstream_TC367393        1.0000   2000  upstream_TC386282        1.0000    538  
upstream_TC361783        1.0000   2000  upstream_TC386012        1.0000   2000  
upstream_TC388416        1.0000   2000  upstream_TC361950        1.0000   2000  
upstream_TC385849        1.0000   2000  upstream_TC363796        1.0000   2000  
upstream_TC397218        1.0000   2000  upstream_TC369593        1.0000   2000  
upstream_TC363231        1.0000   2000  upstream_TC367674        1.0000   2000  
upstream_TC364351        1.0000    738  upstream_TC364972        1.0000   2000  
upstream_TC365315        1.0000   2000  upstream_TC363121        1.0000   2000  
upstream_TC360064        1.0000   2000  upstream_TC365071        1.0000   2000  
upstream_TC366593        1.0000   2000  upstream_TC385659        1.0000   1950  
upstream_TC388210        1.0000   2000  upstream_TC387299        1.0000   2000  
upstream_TC364306        1.0000   2000  upstream_TC365728        1.0000   2000  
upstream_TC386743        1.0000   2000  upstream_TC388200        1.0000   2000  
upstream_TC400611        1.0000   2000  upstream_TC393717        1.0000   2000  
upstream_TC363599        1.0000   1942  upstream_AW144421        1.0000   2000  
upstream_TC360849        1.0000   2000  upstream_TC374105        1.0000   2000  
upstream_TC396033        1.0000   2000  upstream_TC360054        1.0000   2000  
upstream_TC365131        1.0000     56  upstream_TC394660        1.0000   2000  
upstream_TC361311        1.0000   2000  upstream_TC360796        1.0000   2000  
upstream_TC361834        1.0000   1373  upstream_AI145565        1.0000   2000  
upstream_TC397076        1.0000   2000  upstream_TC376396        1.0000   2000  
upstream_TC385421        1.0000   2000  upstream_TC360720        1.0000   2000  
upstream_TC386307        1.0000   2000  upstream_TC387104        1.0000   2000  
upstream_TC359509        1.0000   1247  upstream_TC390617        1.0000   2000  
upstream_TC362258        1.0000   2000  upstream_TC392868        1.0000   2000  
upstream_TC365773        1.0000   2000  upstream_TC384367        1.0000   2000  
upstream_TC360061        1.0000   2000  upstream_TC376940        1.0000   2000  
upstream_TC385863        1.0000   2000  upstream_TC365216        1.0000   2000  
upstream_TC389660        1.0000   2000  upstream_TC359614        1.0000   2000  
upstream_TC369651        1.0000   2000  upstream_TC362352        1.0000   2000  
upstream_TC381962        1.0000   1070  upstream_TC386804        1.0000   2000  
upstream_TC389657        1.0000   2000  upstream_TC389729        1.0000   2000  
upstream_TC409352        1.0000   2000  upstream_TC384682        1.0000   2000  
upstream_TC390968        1.0000   2000  upstream_TC373970        1.0000   2000  
upstream_TC366718        1.0000   2000  upstream_TC366265        1.0000     82  
upstream_TC362647        1.0000   2000  upstream_TC362660        1.0000   2000  
upstream_TC366567        1.0000   2000  upstream_AK036394        1.0000   2000  
upstream_AK029481        1.0000   2000  upstream_AK049692        1.0000   2000  
upstream_AK031177        1.0000   2000  upstream_AK083155        1.0000   2000  
upstream_XM_126127       1.0000   2000  upstream_AK002679        1.0000   2000  
upstream_AK012411        1.0000   2000  upstream_AK078033        1.0000   2000  
upstream_NM_016695|NP378 1.0000   2000  upstream_BC048371        1.0000   2000  
upstream_AK088961        1.0000   2000  upstream_AK030674        1.0000   2000  
upstream_AK078935        1.0000   2000  upstream_AK002297        1.0000   2000  
upstream_NM_013607|NP379 1.0000    881  upstream_XM_129469       1.0000   2000  
upstream_AK017650        1.0000   2000  upstream_AK004829        1.0000   2000  
upstream_NM_022879|NP377 1.0000   2000  upstream_AK076663        1.0000   2000  
upstream_M76601|NP059476 1.0000   2000  upstream_M55617|NP057457 1.0000   2000  
upstream_AK049373        1.0000   2000  upstream_BC032191        1.0000   2000  
upstream_NM_032398|NP377 1.0000   2000  upstream_NM_028715       1.0000   2000  
upstream_AK081550        1.0000   2000  upstream_XM_134059       1.0000   2000  
upstream_J04694|NP057073 1.0000   2000  upstream_AK028989        1.0000   2000  
upstream_AK085221        1.0000   2000  upstream_NM_010917|NP384 1.0000   2000  
upstream_AK036188        1.0000   2000  upstream_AK014343        1.0000   2000  
upstream_AK045400        1.0000   2000  upstream_AK049652        1.0000   2000  
upstream_NM_010442|NP379 1.0000   2000  upstream_AK009867        1.0000   2000  
upstream_AK004102        1.0000   2000  upstream_AF162853|NP0449 1.0000   2000  
upstream_BC006783|NP3405 1.0000   2000  upstream_NM_011390|NP383 1.0000    102  
upstream_NM_009202|NP382 1.0000   2000  upstream_AK075704        1.0000   2000  
upstream_BC046540        1.0000   2000  upstream_AK012684        1.0000   2000  
upstream_AK002918        1.0000   2000  upstream_AK004094        1.0000   2000  
upstream_AK018172        1.0000   2000  upstream_NM_026362       1.0000   2000  
upstream_AK009959        1.0000   2000  upstream_AK031801        1.0000   2000  
upstream_AK042260        1.0000   2000  upstream_AK081484        1.0000   2000  
upstream_BC011110|NP3749 1.0000   2000  upstream_XM_125538       1.0000   2000  
upstream_AK028897        1.0000   2000  upstream_AK079196        1.0000   2000  
upstream_AK044924        1.0000   2000  upstream_AK043206        1.0000   2000  
upstream_AK075609        1.0000   2000  upstream_AK078148        1.0000   2000  
upstream_AK080318|NP5720 1.0000    932  upstream_NM_009322|NP381 1.0000   2000  
upstream_XM_130324       1.0000   2000  upstream_AK032742        1.0000    204  
upstream_AK052518        1.0000   2000  upstream_AK044357        1.0000   1777  
upstream_AK031699        1.0000   2000  upstream_AK002559        1.0000   2000  
upstream_AK007972        1.0000   2000  upstream_AK080224        1.0000   2000  
upstream_NM_146129       1.0000   2000  upstream_AK003088        1.0000   2000  
upstream_AK005423        1.0000   2000  upstream_AK004716        1.0000   2000  
upstream_XM_132762       1.0000   2000  upstream_AK004781        1.0000   2000  
upstream_AK043837        1.0000   2000  upstream_NM_173071|NP589 1.0000   2000  
upstream_AK012953        1.0000   2000  upstream_AK008346        1.0000   2000  
upstream_AK048515        1.0000   2000  upstream_AF208023|NP2225 1.0000   2000  
upstream_NM_007822|NP380 1.0000   2000  upstream_AF216832|NP2286 1.0000   2000  
upstream_BC042661        1.0000   2000  upstream_AK004851        1.0000   2000  
upstream_NM_009366|NP381 1.0000   2000  upstream_AK052368        1.0000   2000  
upstream_AK077679        1.0000   2000  upstream_AK004659        1.0000    875  
upstream_AK089911        1.0000   2000  upstream_NM_030677|NP415 1.0000   2000  
upstream_BC013628|NP3923 1.0000   2000  upstream_AK004658        1.0000   2000  
upstream_AK041115        1.0000   2000  upstream_AK079120        1.0000   2000  
upstream_NM_008553|NP381 1.0000   2000  upstream_AK012647        1.0000   2000  
upstream_AK028295        1.0000   2000  upstream_AK082317|NP5714 1.0000   2000  
upstream_BC005477        1.0000   2000  upstream_AK051580        1.0000   2000  
upstream_AK029065        1.0000   1171  upstream_BC026545|NP5232 1.0000   2000  
upstream_AK053076        1.0000   2000  upstream_AK087063        1.0000   2000  
upstream_AK090130        1.0000   2000  upstream_AK002399        1.0000   2000  
upstream_AF064749|NP0489 1.0000   2000  upstream_XM_127811       1.0000   2000  
upstream_XM_128959       1.0000    780  upstream_AK088478        1.0000   2000  
upstream_BC003733|NP3237 1.0000   1318  upstream_BC038266        1.0000   2000  
upstream_BC031847        1.0000   2000  upstream_BC004084        1.0000   2000  
upstream_AK014223        1.0000   2000  upstream_NM_152804|NP527 1.0000   2000

COMMAND LINE SUMMARY

This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme /local/tgi/jtsai/NORM/UPSTREAM/ratgenes/upstream_2k.all.fa -dna -mod zoops -nmotifs 10 -maxsize 420000 -maxw 20 -evt 1e-5 

model:  mod=         zoops    nmotifs=        10    evt=         1e-05
object function=  E-value of product of p-values
width:  minw=            8    maxw=           20    minic=        0.00
width:  wg=             11    ws=              1    endgaps=       yes
nsites: minsites=        2    maxsites=      210    wnsites=       0.8
theta:  prob=            1    spmap=         uni    spfuzz=        0.5
em:     prior=   dirichlet    b=            0.01    maxiter=        50
        distance=    1e-05
data:   n=          401036    N=             210
strands: +
sample: seed=            0    seqfrac=         1
Letter frequencies in dataset:
A 0.260 C 0.240 G 0.233 T 0.267 
Background letter frequencies (from dataset with add-one prior applied):
A 0.260 C 0.240 G 0.233 T 0.267

P N
MOTIF 1 width = 20 sites = 117 llr = 1781 E-value = 4.7e-265

NAME	START	P-VALUE				SITES
			Simplified	A	9	6	9	4	9	5	a	4	a	5	9	5	8	5	9	4	9	6	9	6
			pos.-specific	C	1	4	1	4	:	5	:	4	:	4	1	4	:	5	:	4	:	4	:	4
			probability	G	:	:	:	1	1	1	:	1	:	:	:	1	1	:	:	1	:	:	:	:
			matrix	T	:	:	:	1	:	:	:	:	:	1	:	:	:	:	:	1	:	:	:	:
.
			bits	2.1
				1.9
				1.7
				1.5
			Information	1.3
			content	1.1
			(22.0 bits)	0.8
				0.6
				0.4
				0.2
				0.0
.
			Multilevel		`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`
			consensus			`C`		`A`		`C`		`A`		`C`		`C`		`C`		`A`		`C`		`C`
			sequence

.

upstream_AK008346	709	6.12e-11	`AACAAAAAAA`		`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`AAAATTTTAC`
upstream_AK004829	1531	6.12e-11	`AAAACCAATC`		`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`AACCAGCATA`
upstream_TC367393	1555	6.12e-11	`AAAAAACAAA`		`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`AACAAAAACA`
upstream_TC385242	1902	6.12e-11	`AAGCAAAAAC`		`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`ATCCCACTTT`
upstream_AK045400	1122	1.09e-10	`AAAAACAGAA`		`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`TGAATGAAAG`
upstream_TC409352	1154	1.09e-10	`ACACACACAA`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`A`	`A`	`A`	`TGTCCCTGAA`
upstream_TC365216	426	2.63e-10	`AAAACAAAAT`		`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`AAACCCAGGG`
upstream_TC385863	334	3.74e-10	`GGGCAGTAGA`		`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`AAACAAACAA`
upstream_AK003088	694	4.92e-10	`AAAAGAACCA`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`CAAAAAAACA`
upstream_NM_146129	448	4.92e-10	`GGTTCGCATT`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`AGCACAAGGA`
upstream_AK007972	206	4.92e-10	`CCAGCTCCGG`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`AAAGAAGCCT`
upstream_AK002559	1469	4.92e-10	`ACACACACAC`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`A`	`TTTGTCTAGG`
upstream_AK009867	462	4.92e-10	`AAAAAGAACC`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`AAAAGAACTG`
upstream_AK081550	1258	4.92e-10	`GTTTGAGACC`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`AAAGAGGTTG`
upstream_NM_022879\|NP377	161	4.92e-10	`TTTCATTCAG`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`AATCCCAAAT`
upstream_TC362660	165	4.92e-10	`ACACACACAC`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`A`	`TCTAAACAAG`
upstream_TC384367	1682	4.92e-10	`CCAGCTCCGG`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`AAGGAACATT`
upstream_TC363599	527	4.92e-10	`CCCCAGCTCC`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`AAAAAAAAAA`
upstream_TC370155	283	4.92e-10	`ACACACACAC`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`A`	`GTGGTATGGG`
upstream_TC373575	654	4.92e-10	`ACACACACAC`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`A`	`GAAGGGAGAG`
upstream_AF064749\|NP0489	1127	7.66e-10	`AAGAAAATAG`		`A`	`A`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_XM_125538	790	7.66e-10	`GAAAAAAAGA`		`A`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`AGAAGTTGCA`
upstream_TC365315	1182	7.66e-10	`TTAAATCTTT`		`A`	`A`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAG`
upstream_BC031847	286	1.04e-09	`GATCTAGGTT`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_AK028295	1621	1.04e-09	`CCTGAAAATC`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_NM_008553\|NP381	570	1.04e-09	`GCGCGCACTA`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_AK004659	36	1.04e-09	`TCTCTCTCTC`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACAGAG`
upstream_AK052368	30	1.04e-09	`CTGTACAGTC`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`GTCTGTACAG`
upstream_NM_009322\|NP381	819	1.04e-09	`TGTAAACATT`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_AK080318\|NP5720	5	1.04e-09	`AAAT`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_NM_026362	832	1.04e-09	`GCTTAGATGA`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_BC006783\|NP3405	598	1.04e-09	`TGGGAATTGG`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_AK036188	677	1.04e-09	`GGAGGCAACT`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_AK028989	1691	1.04e-09	`GCGCGCGCGC`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_TC392868	1068	1.04e-09	`TAATTCACTT`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_TC390617	1696	1.04e-09	`ACACACACGC`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_TC387104	1566	1.04e-09	`CACCATTACC`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_TC385421	1633	1.04e-09	`GCGCGCGCGC`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_TC393717	1355	1.04e-09	`AAGAACCCCT`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`AGTCACAGTC`
upstream_TC388200	1033	1.04e-09	`GAGCACACTC`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACATAC`
upstream_TC387299	342	1.04e-09	`ACACACACAT`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACGC`
upstream_TC388416	1427	1.04e-09	`ATGGTGTGAG`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_TC362834	1779	1.04e-09	`CCTCCCTCAT`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_TC386900	1311	1.04e-09	`TGGGCACATA`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACACACAC`
upstream_TC384482	1535	1.04e-09	`TGCCTACATC`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`ACACTCATAT`
upstream_AK014223	1057	1.17e-09	`ACACTGGGGG`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`CACCAAATGA`
upstream_AK090130	643	1.60e-09	`GAAAGGTAAA`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`AGAAAAAAAA`
upstream_BC046540	667	1.60e-09	`CCCAGCTCCA`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`AAAGTTGTCC`
upstream_BC003733\|NP3237	1118	2.01e-09	`GCCACCACGA`		`A`	`C`	`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`ACCACACCGA`
upstream_AK009959	944	2.28e-09	`TTCTTTCATA`		`A`	`A`	`A`	`T`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`AAATCAAAAA`
upstream_TC366567	1314	2.60e-09	`AAAAAAAGAA`		`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`GAAATGTCCC`
upstream_AK018172	968	3.38e-09	`AAGAACCAAA`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`C`	`TTAACGTTAA`
upstream_AK082317\|NP5714	1747	3.88e-09	`AAAAATAAAT`		`A`	`A`	`A`	`T`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`C`	`AAATAAATAA`
upstream_AK080224	985	5.72e-09	`AAAAAAAAAG`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`TAGAGCCTTA`
upstream_XM_126127	467	5.72e-09	`GACAAGACAC`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`T`	`A`	`C`	`A`	`C`	`ACACACACAT`
upstream_AF216832\|NP2286	1721	7.42e-09	`TAAAAAAAAG`		`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`CGTTTTCAAA`
upstream_NM_032398\|NP377	1032	8.42e-09	`CGAAAAAAAG`		`A`	`A`	`C`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`AGAGATATTA`
upstream_AW144421	1251	8.42e-09	`CGAAAAAAAG`		`A`	`A`	`C`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`ATACTGAGGA`
upstream_AK077679	1098	1.20e-08	`AAAAAAAGAA`		`C`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`CCAATGTAAC`
upstream_AK048515	758	1.34e-08	`TTTAAAAAAT`		`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`C`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`CCGGAGACTC`
upstream_AK028897	1746	1.34e-08	`CCGAAAAAAA`		`A`	`A`	`C`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`C`	`ACCCTGGCAG`
upstream_AK014343	797	1.34e-08	`ATTTAAGTTT`		`A`	`C`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`GTGCGTGGAA`
upstream_AK044924	4	1.49e-08	`AAA`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`GAAAAAGAAA`
upstream_TC365071	1869	1.49e-08	`CCCAGCTCAG`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`AAGATTTATT`
upstream_TC365371	714	1.85e-08	`AACAAAAAAC`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`AAAACCCCAA`
upstream_TC376396	531	2.89e-08	`ATACAAATGC`		`A`	`A`	`A`	`C`	`A`	`A`	`A`	`T`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`T`	`A`	`A`	`A`	`A`	`ACGTTCAGAG`
upstream_TC402123	617	3.24e-08	`ATAAATCTTT`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`G`	`GAAGAAAACC`
upstream_AK030674	1482	3.62e-08	`AATTGTGTTA`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`C`	`C`	`A`	`A`	`A`	`A`	`A`	`C`	`CCTAGCATAT`
upstream_NM_010442\|NP379	663	4.46e-08	`TCTCAGGATT`		`A`	`A`	`C`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`G`	`A`	`C`	`A`	`C`	`A`	`A`	`A`	`A`	`AGTGAAGTCC`
upstream_AK002679	458	4.46e-08	`CAAAAAGCAA`		`A`	`A`	`C`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`ACAGTTGAGA`
upstream_AK029481	509	4.46e-08	`AGAGATCACT`		`A`	`A`	`A`	`T`	`G`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`AAATCTTTCC`
upstream_AK002297	1477	4.93e-08	`CTCCGAAAAA`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`T`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`AAACTCGGTC`
upstream_AK049373	986	5.42e-08	`ATCTTGCTGT`		`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`C`	`C`	`A`	`A`	`CCAACTAACC`
upstream_AK036394	1190	5.42e-08	`CAGCTCCGAA`		`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`AAAGAGTACT`
upstream_BC013628\|NP3923	1168	9.45e-08	`CCCAGGAAGA`		`C`	`A`	`A`	`C`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`C`	`A`	`C`	`A`	`G`	`A`	`C`	`A`	`A`	`CTCAGAGCAA`
upstream_TC385849	518	9.45e-08	`CAAAAAAAAG`		`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`CACCACCCCT`
upstream_AK042260	1217	1.04e-07	`CACACAGGCC`		`A`	`A`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`T`	`A`	`C`	`G`	`C`	`A`	`T`	`A`	`A`	`A`	`A`	`ATAAAAGGAG`
upstream_TC386012	1335	1.24e-07	`AAACAGTAAA`		`A`	`C`	`A`	`A`	`A`	`C`	`A`	`A`	`C`	`A`	`A`	`A`	`G`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`CTGCCTGTTA`
upstream_XM_130324	483	1.77e-07	`AGCTCCGAAA`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`G`	`AAAGAAGTTT`
upstream_TC393047	121	1.77e-07	`TAAATATTTT`		`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`GAAATCTTTA`
upstream_TC362352	1591	2.10e-07	`ATACATATAC`		`A`	`C`	`A`	`T`	`A`	`C`	`A`	`C`	`A`	`T`	`A`	`C`	`A`	`C`	`A`	`T`	`A`	`C`	`A`	`C`	`ATACACATAC`
upstream_AK043837	610	2.50e-07	`ACATGTGAAG`		`C`	`A`	`A`	`A`	`C`	`A`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`A`	`A`	`C`	`GGAGGCTGTT`
upstream_AK088478	31	2.72e-07	`ATTACCAAGG`		`A`	`C`	`A`	`G`	`A`	`A`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`A`	`T`	`G`	`A`	`A`	`A`	`A`	`GAAACAAAGA`
upstream_TC397218	265	3.49e-07	`ACACATGCAT`		`A`	`C`	`A`	`C`	`A`	`C`	`A`	`T`	`A`	`C`	`A`	`A`	`G`	`C`	`A`	`T`	`A`	`C`	`A`	`C`	`ACATGCGCAA`
upstream_AK078148	237	3.78e-07	`TATTTTAGTC`		`A`	`C`	`A`	`A`	`C`	`A`	`A`	`C`	`A`	`C`	`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`C`	`A`	`TAGAAAGTGT`
upstream_XM_134059	521	4.43e-07	`ACCTTGTCTC`		`A`	`A`	`A`	`A`	`G`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`A`	`ATTGTTTGGC`
upstream_TC388418	1553	4.43e-07	`AAAGAAAGCA`		`A`	`A`	`A`	`G`	`A`	`C`	`A`	`A`	`A`	`T`	`A`	`A`	`A`	`A`	`T`	`A`	`A`	`A`	`A`	`A`	`CACAACTCAG`
upstream_TC360054	1654	4.80e-07	`AACTTGTATC`		`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`C`	`C`	`C`	`A`	`A`	`A`	`A`	`CTCCATCCCC`
upstream_AK031177	1641	5.19e-07	`TTGTCTCAAG`		`C`	`A`	`A`	`G`	`T`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`GTGCCATTGG`
upstream_AK004781	164	5.62e-07	`CCTCTGCAGC`		`A`	`A`	`A`	`C`	`A`	`C`	`A`	`A`	`A`	`G`	`C`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`G`	`CCCAAAACAA`
upstream_TC367674	1907	8.24e-07	`AGAATACTTA`		`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`T`	`A`	`C`	`T`	`A`	`AAGGGCCAGG`
upstream_AF162853\|NP0449	857	8.87e-07	`ATTCACTCTC`		`A`	`C`	`A`	`C`	`A`	`A`	`A`	`A`	`A`	`T`	`A`	`A`	`T`	`A`	`A`	`T`	`A`	`A`	`A`	`C`	`AAAGAAAATG`
upstream_BC011110\|NP3749	910	9.54e-07	`TTTTGCTACT`		`C`	`A`	`A`	`G`	`A`	`T`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`CCTACTTCGA`
upstream_TC373970	212	1.03e-06	`GTGTGCACAT`		`A`	`C`	`A`	`T`	`A`	`C`	`A`	`C`	`A`	`C`	`A`	`A`	`A`	`G`	`T`	`C`	`A`	`A`	`A`	`A`	`AAATAGATCC`
upstream_TC385659	21	1.03e-06	`TAATATTAAT`		`C`	`C`	`A`	`T`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`T`	`A`	`C`	`A`	`T`	`A`	`A`	`A`	`A`	`GACAGTTAAG`
upstream_NM_013607\|NP379	23	1.10e-06	`AGAGACACAC`		`A`	`C`	`A`	`G`	`A`	`G`	`A`	`G`	`A`	`C`	`A`	`G`	`A`	`C`	`A`	`G`	`A`	`C`	`A`	`A`	`AAAGAGAAGA`
upstream_AK049692	37	1.18e-06	`CTCACTGATT`		`A`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`C`	`A`	`A`	`A`	`A`	`T`	`T`	`A`	`A`	`C`	`TAAATACCTT`
upstream_AK051580	805	1.27e-06	`CATGCTTCAC`		`C`	`C`	`A`	`T`	`T`	`C`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`A`	`TGGTTAGTGA`
upstream_AK041115	460	1.27e-06	`AAGACTGATA`		`A`	`C`	`A`	`G`	`A`	`A`	`A`	`G`	`A`	`C`	`A`	`C`	`G`	`C`	`A`	`C`	`A`	`C`	`A`	`T`	`GTCTGTCCCC`
upstream_NM_028715	911	1.27e-06	`AATTGTTTAA`		`A`	`A`	`A`	`A`	`A`	`C`	`A`	`G`	`A`	`T`	`A`	`A`	`G`	`A`	`T`	`A`	`A`	`A`	`A`	`A`	`TAGACAGTGC`
upstream_TC396033	1026	1.27e-06	`GAGATAGATG`		`A`	`C`	`A`	`G`	`A`	`C`	`A`	`G`	`A`	`C`	`A`	`G`	`A`	`C`	`A`	`G`	`A`	`C`	`A`	`G`	`ACAGACAGAT`
upstream_TC374105	1026	1.27e-06	`GAGATAGATG`		`A`	`C`	`A`	`G`	`A`	`C`	`A`	`G`	`A`	`C`	`A`	`G`	`A`	`C`	`A`	`G`	`A`	`C`	`A`	`G`	`ACAGACAGAT`
upstream_TC370838	1259	1.27e-06	`CTGGCAAAAT`		`A`	`C`	`C`	`C`	`A`	`C`	`A`	`C`	`A`	`C`	`T`	`A`	`A`	`A`	`A`	`T`	`A`	`A`	`A`	`A`	`GTAAAGGTTA`
upstream_TC392468	1515	1.47e-06	`ATATAACTAG`		`A`	`C`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`C`	`A`	`C`	`A`	`C`	`C`	`A`	`AATTATCACT`
upstream_TC362647	1522	1.93e-06	`GTTATATTAT`		`A`	`A`	`A`	`C`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`T`	`A`	`C`	`C`	`C`	`A`	`C`	`A`	`A`	`TATAAAACAG`
upstream_TC387521	757	2.07e-06	`ATCCTGTTTC`		`A`	`A`	`A`	`A`	`A`	`A`	`A`	`T`	`A`	`A`	`A`	`T`	`A`	`C`	`A`	`A`	`T`	`A`	`A`	`A`	`ATAAAATCTC`
upstream_TC364351	602	2.70e-06	`AGATCTACTG`		`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`T`	`A`	`A`	`T`	`A`	`TGCATGAATT`
upstream_TC369593	1827	2.88e-06	`TTCCTTTTTA`		`A`	`A`	`A`	`C`	`A`	`A`	`C`	`A`	`A`	`C`	`A`	`A`	`C`	`A`	`A`	`G`	`A`	`A`	`A`	`C`	`TGGTTTTCCT`
upstream_AK052518	1746	3.50e-06	`GAACAGTAGG`		`A`	`C`	`A`	`G`	`G`	`A`	`A`	`C`	`A`	`G`	`A`	`C`	`A`	`C`	`A`	`A`	`C`	`A`	`A`	`A`	`GGTAGTCTCC`
upstream_AK012647	53	4.23e-06	`TGAAACCTCA`		`A`	`A`	`A`	`C`	`C`	`C`	`A`	`C`	`C`	`C`	`A`	`G`	`A`	`A`	`A`	`G`	`A`	`C`	`A`	`C`	`ACTTCCTCTA`
upstream_AK004658	65	4.23e-06	`CGGTGTGGAG`		`A`	`C`	`C`	`A`	`A`	`A`	`A`	`G`	`A`	`C`	`C`	`A`	`A`	`A`	`A`	`A`	`T`	`A`	`A`	`A`	`AAGCAAGATC`
upstream_AK012953	364	5.76e-06	`AAAGTGTGAG`		`A`	`A`	`A`	`G`	`G`	`C`	`A`	`G`	`A`	`C`	`A`	`A`	`G`	`C`	`A`	`A`	`A`	`C`	`C`	`C`	`AAGTAAAACA`
upstream_TC365773	910	7.30e-06	`AGACAGAACA`		`C`	`C`	`A`	`T`	`T`	`C`	`A`	`C`	`A`	`A`	`A`	`A`	`T`	`C`	`A`	`A`	`A`	`A`	`A`	`A`	`GGGGGTGGGG`
upstream_TC360849	1785	1.03e-05	`GATCTGAGGT`		`A`	`C`	`A`	`A`	`T`	`C`	`A`	`G`	`A`	`A`	`A`	`A`	`G`	`A`	`A`	`G`	`C`	`C`	`A`	`C`	`CAGGGAAATG`
upstream_TC386804	1384	1.22e-05	`AACAGTTTAG`		`A`	`C`	`A`	`T`	`A`	`C`	`A`	`T`	`A`	`C`	`A`	`T`	`A`	`C`	`A`	`T`	`A`	`C`	`A`	`T`	`ACATACATAC`
upstream_XM_128959	17	1.36e-05	`TCATAAGGGG`		`A`	`A`	`A`	`T`	`G`	`C`	`A`	`A`	`A`	`T`	`C`	`A`	`A`	`C`	`A`	`C`	`A`	`A`	`C`	`C`	`CTGAGATTTC`
upstream_TC397076	665	1.36e-05	`TTAAAAGTCC`		`C`	`A`	`A`	`A`	`G`	`A`	`A`	`A`	`A`	`C`	`C`	`C`	`C`	`A`	`A`	`A`	`A`	`C`	`A`	`C`	`TATGTAGGGT`

Motif 1 block diagrams

Name

Lowest
p-value

Motifs

upstream_AK008346

6.1e-11

upstream_AK004829

6.1e-11

upstream_TC367393

6.1e-11

upstream_TC385242

6.1e-11

upstream_AK045400

1.1e-10

upstream_TC409352

1.1e-10

upstream_TC365216

2.6e-10

upstream_TC385863

3.7e-10

upstream_AK003088

4.9e-10

upstream_NM_146129

4.9e-10

upstream_AK007972

4.9e-10

upstream_AK002559

4.9e-10

upstream_AK009867

4.9e-10

upstream_AK081550

4.9e-10

upstream_NM_022879|NP377

4.9e-10

upstream_TC362660

4.9e-10

upstream_TC384367

4.9e-10

upstream_TC363599

4.9e-10

upstream_TC370155

4.9e-10

upstream_TC373575

4.9e-10

upstream_AF064749|NP0489

7.7e-10

upstream_XM_125538

7.7e-10

upstream_TC365315

7.7e-10

upstream_BC031847

1e-09

upstream_AK028295

1e-09

upstream_NM_008553|NP381

1e-09

upstream_AK004659

1e-09

upstream_AK052368

1e-09

upstream_NM_009322|NP381

1e-09

upstream_AK080318|NP5720

1e-09

upstream_NM_026362

1e-09

upstream_BC006783|NP3405

1e-09

upstream_AK036188

1e-09

upstream_AK028989

1e-09

upstream_TC392868

1e-09

upstream_TC390617

1e-09

upstream_TC387104

1e-09

upstream_TC385421

1e-09

upstream_TC393717

1e-09

upstream_TC388200

1e-09

upstream_TC387299

1e-09

upstream_TC388416

1e-09

upstream_TC362834

1e-09

upstream_TC386900

1e-09

upstream_TC384482

1e-09

upstream_AK014223

1.2e-09

upstream_AK090130

1.6e-09

upstream_BC046540

1.6e-09

upstream_BC003733|NP3237

2e-09

upstream_AK009959

2.3e-09

upstream_TC366567

2.6e-09

upstream_AK018172

3.4e-09

upstream_AK082317|NP5714

3.9e-09

upstream_AK080224

5.7e-09

upstream_XM_126127

5.7e-09

upstream_AF216832|NP2286

7.4e-09

upstream_NM_032398|NP377

8.4e-09

upstream_AW144421

8.4e-09

upstream_AK077679

1.2e-08

upstream_AK048515

1.3e-08

upstream_AK028897

1.3e-08

upstream_AK014343

1.3e-08

upstream_AK044924

1.5e-08

upstream_TC365071

1.5e-08

upstream_TC365371

1.8e-08

upstream_TC376396

2.9e-08

upstream_TC402123

3.2e-08

upstream_AK030674

3.6e-08

upstream_NM_010442|NP379

4.5e-08

upstream_AK002679

4.5e-08

upstream_AK029481

4.5e-08

upstream_AK002297

4.9e-08

upstream_AK049373

5.4e-08

upstream_AK036394

5.4e-08

upstream_BC013628|NP3923

9.5e-08

upstream_TC385849

9.5e-08

upstream_AK042260

1e-07

upstream_TC386012

1.2e-07

upstream_XM_130324

1.8e-07

upstream_TC393047

1.8e-07

upstream_TC362352

2.1e-07

upstream_AK043837

2.5e-07

upstream_AK088478

2.7e-07

upstream_TC397218

3.5e-07

upstream_AK078148

3.8e-07

upstream_XM_134059

4.4e-07

upstream_TC388418

4.4e-07

upstream_TC360054

4.8e-07

upstream_AK031177

5.2e-07

upstream_AK004781

5.6e-07

upstream_TC367674

8.2e-07

upstream_AF162853|NP0449

8.9e-07

upstream_BC011110|NP3749

9.5e-07

upstream_TC373970

1e-06

upstream_TC385659

1e-06

upstream_NM_013607|NP379

1.1e-06

upstream_AK049692

1.2e-06

upstream_AK051580

1.3e-06

upstream_AK041115

1.3e-06

upstream_NM_028715

1.3e-06

upstream_TC396033

1.3e-06

upstream_TC374105

1.3e-06

upstream_TC370838

1.3e-06

upstream_TC392468

1.5e-06

upstream_TC362647

1.9e-06

upstream_TC387521

2.1e-06

upstream_TC364351

2.7e-06

upstream_TC369593

2.9e-06

upstream_AK052518

3.5e-06

upstream_AK012647

4.2e-06

upstream_AK004658

4.2e-06

upstream_AK012953

5.8e-06

upstream_TC365773

7.3e-06

upstream_TC360849

1e-05

upstream_TC386804

1.2e-05

upstream_XM_128959

1.4e-05

upstream_TC397076

1.4e-05

SCALE

\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|
1	25	50	75	100	125	150	175	200	225	250	275	300	325	350	375	400	425	450	475	500	525	550	575	600	625	650	675	700	725	750	775	800	825	850	875	900	925	950	975

Motif 1 in BLOCKS format

BL   MOTIF 1 width=20 seqs=117
upstream_AK008346        (  709) AAACAAAAACAAAAACAAAA  1 
upstream_AK004829        ( 1531) AAACAAACAAACAAACAAAA  1 
upstream_TC367393        ( 1555) AAACAAACAAACAAACAAAA  1 
upstream_TC385242        ( 1902) AAACAAACAAACAAACAAAA  1 
upstream_AK045400        ( 1122) AAACAAACACAAAAAAAAAA  1 
upstream_TC409352        ( 1154) ACACACACACACACACAAAA  1 
upstream_TC365216        (  426) AAAAACAAAAACAAACAAAA  1 
upstream_TC385863        (  334) AAACAAACAAACAAACAAAC  1 
upstream_AK003088        (  694) AAAAAAAAAAAAACAAAAAA  1 
upstream_NM_146129       (  448) AAAAAAAAAAAAAAAAAAAA  1 
upstream_AK007972        (  206) AAAAAAAAAAAAAAAAAAAA  1 
upstream_AK002559        ( 1469) ACACACACACACACACACAA  1 
upstream_AK009867        (  462) AAAAAAAAAAAAAAAAAAAA  1 
upstream_AK081550        ( 1258) AAAAAAAAAAAAAAAAAAAA  1 
upstream_NM_022879|NP377 (  161) AAAAAAAAAAAAAAAAAAAA  1 
upstream_TC362660        (  165) ACACACACACACACACACAA  1 
upstream_TC384367        ( 1682) AAAAAAAAAAAAAAAAAAAA  1 
upstream_TC363599        (  527) AAAAAAAAAAAAAAAAAAAA  1 
upstream_TC370155        (  283) ACACACACACACACACACAA  1 
upstream_TC373575        (  654) ACACACACACACACACACAA  1 
upstream_AF064749|NP0489 ( 1127) AAACACACACACACACACAC  1 
upstream_XM_125538       (  790) ACAAAAAAAAAAAAAAAAAA  1 
upstream_TC365315        ( 1182) AAACACACACACACACACAC  1 
upstream_BC031847        (  286) ACACACACACACACACACAC  1 
upstream_AK028295        ( 1621) ACACACACACACACACACAC  1 
upstream_NM_008553|NP381 (  570) ACACACACACACACACACAC  1 
upstream_AK004659        (   36) ACACACACACACACACACAC  1 
upstream_AK052368        (   30) ACACACACACACACACACAC  1 
upstream_NM_009322|NP381 (  819) ACACACACACACACACACAC  1 
upstream_AK080318|NP5720 (    5) ACACACACACACACACACAC  1 
upstream_NM_026362       (  832) ACACACACACACACACACAC  1 
upstream_BC006783|NP3405 (  598) ACACACACACACACACACAC  1 
upstream_AK036188        (  677) ACACACACACACACACACAC  1 
upstream_AK028989        ( 1691) ACACACACACACACACACAC  1 
upstream_TC392868        ( 1068) ACACACACACACACACACAC  1 
upstream_TC390617        ( 1696) ACACACACACACACACACAC  1 
upstream_TC387104        ( 1566) ACACACACACACACACACAC  1 
upstream_TC385421        ( 1633) ACACACACACACACACACAC  1 
upstream_TC393717        ( 1355) ACACACACACACACACACAC  1 
upstream_TC388200        ( 1033) ACACACACACACACACACAC  1 
upstream_TC387299        (  342) ACACACACACACACACACAC  1 
upstream_TC388416        ( 1427) ACACACACACACACACACAC  1 
upstream_TC362834        ( 1779) ACACACACACACACACACAC  1 
upstream_TC386900        ( 1311) ACACACACACACACACACAC  1 
upstream_TC384482        ( 1535) ACACACACACACACACACAC  1 
upstream_AK014223        ( 1057) AAAAAAAGAAAAAAACAAAA  1 
upstream_AK090130        (  643) AAAAAAAGAAAAAAAAAAAA  1 
upstream_BC046540        (  667) AAAAAAAGAAAAAAAAAAAA  1 
upstream_BC003733|NP3237 ( 1118) ACAAAAAGAAAAAAAAAAAA  1 
upstream_AK009959        (  944) AAATAAACAAACAAACAAAA  1 
upstream_TC366567        ( 1314) AAAGAAAAAAAAAAAAAAAA  1 
upstream_AK018172        (  968) AAAAAAAAAAAAAAAGAAAC  1 
upstream_AK082317|NP5714 ( 1747) AAATAAACAAACAAACAAAC  1 
upstream_AK080224        (  985) AAAAAAAAAAAGAAAAAAAA  1 
upstream_XM_126127       (  467) ACACACACACACACATACAC  1 
upstream_AF216832|NP2286 ( 1721) AAAAAGAAAAAAACAAAAAA  1 
upstream_NM_032398|NP377 ( 1032) AACCAAAAAAAAAAAAAAAA  1 
upstream_AW144421        ( 1251) AACCAAAAAAAAAAAAAAAA  1 
upstream_AK077679        ( 1098) CCAAAAAAAAAAAAAAAAAA  1 
upstream_AK048515        (  758) AAAAACAAAACCAAACAAAA  1 
upstream_AK028897        ( 1746) AACCAAAAAAAAAAAAAAAC  1 
upstream_AK014343        (  797) ACCAAAAAACAAAAAAAAAA  1 
upstream_AK044924        (    4) AAAAAAAGAAAAGAAAAAAA  1 
upstream_TC365071        ( 1869) AAAAAAAGAAAAGAAAAAAA  1 
upstream_TC365371        (  714) AAAAAAAACAAAAAACAAAA  1 
upstream_TC376396        (  531) AAACAAATAAAAAAATAAAA  1 
upstream_TC402123        (  617) AAAAAAAAAAAAAAAGAAAG  1 
upstream_AK030674        ( 1482) AAAAAAACAAAACCAAAAAC  1 
upstream_NM_010442|NP379 (  663) AACAAAACAAAGACACAAAA  1 
upstream_AK002679        (  458) AACAAAACAAAAGAACAAAA  1 
upstream_AK029481        (  509) AAATGCAAAAAAAAAAAAAA  1 
upstream_AK002297        ( 1477) AAAAAAAAATAGAAAAAAAA  1 
upstream_AK049373        (  986) AAAAACAAAAACAAAACCAA  1 
upstream_AK036394        ( 1190) AAAAAGAAAAAAGAAAAAAA  1 
upstream_BC013628|NP3923 ( 1168) CAACAAAGAAACACAGACAA  1 
upstream_TC385849        (  518) AAAAGAAAAGAAAAAAAAAA  1 
upstream_AK042260        ( 1217) AAACACACATACGCATAAAA  1 
upstream_TC386012        ( 1335) ACAAACAACAAAGAACAAAA  1 
upstream_XM_130324       (  483) AAAAAAAAAAAGAAAGAAAG  1 
upstream_TC393047        (  121) AAAAAGAAAGAAAAAGAAAA  1 
upstream_TC362352        ( 1591) ACATACACATACACATACAC  1 
upstream_AK043837        (  610) CAAACAACACACACACAAAC  1 
upstream_AK088478        (   31) ACAGAAACACACAATGAAAA  1 
upstream_TC397218        (  265) ACACACATACAAGCATACAC  1 
upstream_AK078148        (  237) ACAACAACACAAAAACAACA  1 
upstream_XM_134059       (  521) AAAAGAAGAAAAAGAAAAAA  1 
upstream_TC388418        ( 1553) AAAGACAAATAAAATAAAAA  1 
upstream_TC360054        ( 1654) AAACAAAACAAAACCCAAAA  1 
upstream_AK031177        ( 1641) CAAGTCAAAAAAACAAAAAA  1 
upstream_AK004781        (  164) AAACACAAAGCAAAACAAAG  1 
upstream_TC367674        ( 1907) AAAAACAAAAAAGAATACTA  1 
upstream_AF162853|NP0449 (  857) ACACAAAAATAATAATAAAC  1 
upstream_BC011110|NP3749 (  910) CAAGATAAAAAAAAAAAAAA  1 
upstream_TC373970        (  212) ACATACACACAAAGTCAAAA  1 
upstream_TC385659        (   21) CCATAAACAAATACATAAAA  1 
upstream_NM_013607|NP379 (   23) ACAGAGAGACAGACAGACAA  1 
upstream_AK049692        (   37) AAAAACAAAACAAAATTAAC  1 
upstream_AK051580        (  805) CCATTCAGAAAAAAAAAAAA  1 
upstream_AK041115        (  460) ACAGAAAGACACGCACACAT  1 
upstream_NM_028715       (  911) AAAAACAGATAAGATAAAAA  1 
upstream_TC396033        ( 1026) ACAGACAGACAGACAGACAG  1 
upstream_TC374105        ( 1026) ACAGACAGACAGACAGACAG  1 
upstream_TC370838        ( 1259) ACCCACACACTAAAATAAAA  1 
upstream_TC392468        ( 1515) ACAAGAAAAGAAACACACCA  1 
upstream_TC362647        ( 1522) AAACAGAAAAATACCCACAA  1 
upstream_TC387521        (  757) AAAAAAATAAATACAATAAA  1 
upstream_TC364351        (  602) AAAAAGAAAAAAGAATAATA  1 
upstream_TC369593        ( 1827) AAACAACAACAACAAGAAAC  1 
upstream_AK052518        ( 1746) ACAGGAACAGACACAACAAA  1 
upstream_AK012647        (   53) AAACCCACCCAGAAAGACAC  1 
upstream_AK004658        (   65) ACCAAAAGACCAAAAATAAA  1 
upstream_AK012953        (  364) AAAGGCAGACAAGCAAACCC  1 
upstream_TC365773        (  910) CCATTCACAAAATCAAAAAA  1 
upstream_TC360849        ( 1785) ACAATCAGAAAAGAAGCCAC  1 
upstream_TC386804        ( 1384) ACATACATACATACATACAT  1 
upstream_XM_128959       (   17) AAATGCAAATCAACACAACC  1 
upstream_TC397076        (  665) CAAAGAAAACCCCAAAACAC  1 
//

Motif 1 position-specific scoring matrix

log-odds matrix: alength= 4 w= 20 n= 397046 bayes= 12.9841 E= 4.7e-265 
   183   -164  -1351  -1351 
   110     89  -1351  -1351 
   184   -181  -1351  -1351 
    60     83   -131   -164 
   175   -323   -177   -296 
    86     97   -218   -496 
   193   -481  -1351  -1351 
    57     86    -68   -296 
   189   -281  -1351  -1351 
    88     80   -245   -216 
   185   -223  -1351   -496 
    93     74   -177   -296 
   170   -323   -107   -396 
   100     94   -377  -1351 
   187   -381  -1351   -296 
    43     89   -118   -138 
   187   -323  -1351   -338 
   124     68  -1351  -1351 
   187   -281  -1351   -396 
   118     55   -245   -396

Motif 1 position-specific probability matrix

letter-probability matrix: alength= 4 w= 20 n= 397046 E= 4.7e-265 
 0.923020  0.076937  0.000020  0.000023 
 0.555530  0.444427  0.000020  0.000023 
 0.931567  0.068391  0.000020  0.000023 
 0.393151  0.427334  0.094029  0.085486 
 0.871743  0.025659  0.068390  0.034208 
 0.470068  0.470066  0.051298  0.008569 
 0.991390  0.008567  0.000020  0.000023 
 0.384605  0.435881  0.145307  0.034208 
 0.965752  0.034206  0.000020  0.000023 
 0.478614  0.418788  0.042751  0.059847 
 0.940113  0.051298  0.000020  0.008569 
 0.495706  0.401696  0.068390  0.034208 
 0.846104  0.025659  0.111122  0.017115 
 0.521345  0.461520  0.017112  0.000023 
 0.948659  0.017113  0.000020  0.034208 
 0.350420  0.444427  0.102575  0.102578 
 0.948659  0.025659  0.000020  0.025662 
 0.615354  0.384603  0.000020  0.000023 
 0.948659  0.034206  0.000020  0.017115 
 0.589715  0.350418  0.042751  0.017115






Time 32119.35 secs.

P N
MOTIF 2 width = 20 sites = 144 llr = 1865 E-value = 1.8e-211

NAME	START	P-VALUE				SITES
			Simplified	A	:	:	1	1	:	1	:	1	:	:	:	:	1	1	:	1	:	1	:	1
			pos.-specific	C	1	2	1	2	1	:	1	1	2	1	:	1	2	:	2	:	2	1	1	:
			probability	G	:	1	:	2	:	:	2	2	:	1	1	3	:	:	1	1	2	:	:	:
			matrix	T	8	7	8	5	9	9	7	6	8	8	9	6	8	9	7	8	5	8	9	8
.
			bits	2.1
				1.9
				1.7
				1.5
			Information	1.3
			content	1.1
			(18.7 bits)	0.8
				0.6
				0.4
				0.2
				0.0
.
			Multilevel		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`
			consensus					`C`								`G`			`C`		`G`
			sequence																		`C`

.

upstream_AK012953	36	3.41e-12	`TCCAACATTC`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`AAGATTTACT`
upstream_AK043837	521	3.41e-12	`AGCAAGGATC`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TTTTTGCAAA`
upstream_XM_130324	864	3.41e-12	`TCCTGCCTGC`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TTGGCGGGGG`
upstream_AF162853\|NP0449	350	3.41e-12	`TCTCTCTCTC`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TTTGAGCTGA`
upstream_NM_010442\|NP379	1824	3.41e-12	`TCAGATTTCC`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TTAAGAGCTT`
upstream_AK017650	1664	3.41e-12	`TCAACGCCTC`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TTTTTTTTAA`
upstream_AK078935	1815	3.41e-12	`TTTTTTCTTC`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TTTTTGCAAA`
upstream_AK078033	1174	3.41e-12	`CCTTTCAGAC`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TTGAGACAGA`
upstream_TC388210	70	3.41e-12	`AGACCTCTGC`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TTAAGATTTA`
upstream_TC363121	3	3.41e-12	`AC`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TTAAAGATCT`
upstream_TC363231	493	3.41e-12	`CTTACATTTC`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TTTTTTCCGG`
upstream_TC393047	1703	3.41e-12	`TTGGGGCTGA`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`ACATAAATGG`
upstream_TC386900	1507	3.41e-12	`TTCTGATTTC`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TTTTTCCGGA`
upstream_AK079196	405	1.24e-11	`TCTTTCTTTC`		`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TTGCTTTTTA`
upstream_AK042260	1732	1.55e-11	`GGGTGTCTTT`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`TTTTCGGAGC`
upstream_BC032191	1167	4.81e-11	`TCGGTGTTTT`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`TTAAGGCCGA`
upstream_TC384367	1507	4.81e-11	`TAGCCAGTGC`		`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TGACCCAATT`
upstream_TC369593	213	4.81e-11	`TGGTTGCCTG`		`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TCGTCTTCTT`
upstream_TC384482	1922	4.81e-11	`CTACACATAC`		`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`GGTTCTTTTT`
upstream_AK028989	433	1.13e-10	`TGTCCTGGAA`		`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`GGTTCTTTTT`
upstream_TC365071	2	1.78e-10	`T`		`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TTCTGCATAG`
upstream_BC005477	958	2.14e-10	`CTAAAAGTTC`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`CAATGTTTAT`
upstream_TC360054	783	2.14e-10	`CAGGGAAAGA`		`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TTCAATTTCA`
upstream_TC359614	1510	2.65e-10	`ATGCTTATCT`		`T`	`C`	`T`	`G`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`CAAATCTGTT`
upstream_AK078148	1408	3.39e-10	`GACTTTTGGG`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`TGTTTTGTTT`
upstream_TC363599	701	3.39e-10	`TTCCCGTGGT`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`A`	`T`	`T`	`TTTGAGAAGA`
upstream_AK004094	1453	7.40e-10	`CGATTCATTA`		`C`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`GGCCCCAGGT`
upstream_TC362800	675	1.46e-09	`GGCCTTGCCA`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`G`	`G`	`T`	`T`	`CTTTTTTTCG`
upstream_AK082317\|NP5714	792	1.98e-09	`TTTTTTGGCT`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`TTTTGGAGCT`
upstream_AK049652	966	3.21e-09	`CCTGGCAGGG`		`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`AGATCCAGCC`
upstream_AK014223	1335	3.73e-09	`TGCTGGCAAA`		`T`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`C`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`TGAACAGCCT`
upstream_TC362258	1917	3.73e-09	`TAGAGGAATT`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`G`	`G`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`TTTTGGAGCT`
upstream_TC386804	1563	4.31e-09	`TCTTTGTTTT`		`C`	`T`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`CTTTCCCTCT`
upstream_AK087063	1689	5.71e-09	`TGTGTTCTAT`		`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`TTGGAAATAG`
upstream_NM_009202\|NP382	1613	5.71e-09	`AACTTGCCTA`		`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`GAGATGGAGT`
upstream_TC386307	230	5.71e-09	`ATTAATTCTG`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`G`	`TGGTTTAGTG`
upstream_TC362030	1434	5.71e-09	`TGTTTGTTTG`		`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`TTAATTCACA`
upstream_TC370838	634	5.71e-09	`TGTTTGTTTG`		`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`GGAACTTAGT`
upstream_AK036394	1536	6.61e-09	`AGCCCAGCAA`		`T`	`G`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`A`	`AAGGACAACA`
upstream_TC409352	998	8.84e-09	`TGGTGTTTTG`		`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`C`	`G`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`ATCAAAGGTA`
upstream_AK043206	21	1.34e-08	`AGCCTCCTGT`		`T`	`T`	`A`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`ATGGTATGGT`
upstream_AK004829	222	1.34e-08	`TGTTTCAATT`		`T`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`C`	`T`	`T`	`CCCCCCCCCC`
upstream_TC363796	63	1.53e-08	`AGATCGTTGT`		`T`	`G`	`T`	`A`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TAACAATCTG`
upstream_AK009867	120	2.00e-08	`CAACTACTAT`		`C`	`C`	`T`	`T`	`T`	`T`	`G`	`G`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TAATCTATCT`
upstream_TC392868	821	2.59e-08	`TCCTTGTTTC`		`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`G`	`T`	`T`	`C`	`T`	`G`	`T`	`T`	`T`	`TGAAAACTTG`
upstream_XM_129469	791	2.95e-08	`TGGGGAGTGG`		`T`	`T`	`T`	`G`	`T`	`T`	`G`	`G`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TCTTCCCCTC`
upstream_AK012684	499	3.35e-08	`TGCCTGAATT`		`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`C`	`T`	`T`	`TTGCGGGGGT`
upstream_TC361311	794	4.30e-08	`CACCCCCCCT`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`C`	`C`	`T`	`C`	`T`	`G`	`T`	`T`	`T`	`GCAAAGTTCT`
upstream_AK030674	1640	4.87e-08	`GTTGAAACCA`		`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`A`	`A`	`T`	`T`	`T`	`GGGAAAAAAA`
upstream_AK014343	625	5.52e-08	`CCGCCCCCCC`		`T`	`T`	`T`	`C`	`C`	`T`	`T`	`T`	`C`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`AAACTCCCCT`
upstream_AK075609	521	7.04e-08	`GGTTGGTTGG`		`T`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`G`	`GTAGCAGCAC`
upstream_TC389657	1617	8.92e-08	`CTCCTTCCCT`		`C`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`TGTTCAGAGC`
upstream_AK076663	350	1.13e-07	`TTTCCTTTCC`		`T`	`T`	`T`	`C`	`T`	`A`	`T`	`C`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`CTTATTCAGT`
upstream_TC402123	1680	1.13e-07	`ACACTCTCTA`		`C`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`C`	`T`	`AACATTACTC`
upstream_AK077679	438	1.42e-07	`GCCAGTAGGG`		`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`GCTTTGTTTT`
upstream_AK083155	1249	1.42e-07	`CCAGCCCCAA`		`C`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`C`	`T`	`C`	`T`	`C`	`T`	`T`	`T`	`CTCTTTCTCT`
upstream_TC390968	771	1.42e-07	`TCTGAAATTA`		`T`	`G`	`C`	`C`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TAACATTCAT`
upstream_TC385421	1095	1.42e-07	`CAACGGCCAG`		`T`	`T`	`T`	`C`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`C`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`A`	`AATAAGCAGG`
upstream_AK081484	1214	1.78e-07	`GCTGGGGTTT`		`T`	`C`	`T`	`C`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`C`	`T`	`C`	`T`	`T`	`T`	`GGCAGCAGGG`
upstream_XM_125538	1113	2.22e-07	`AGTTAACAAG`		`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`C`	`T`	`T`	`T`	`T`	`A`	`AGAAATCAGT`
upstream_TC364953	1095	2.22e-07	`GTGCTGTAGA`		`T`	`C`	`T`	`A`	`T`	`T`	`T`	`T`	`C`	`C`	`T`	`G`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`CAGCCAGTTC`
upstream_BC038266	706	2.77e-07	`TTTTTTAAAA`		`C`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`A`	`CACCATTTCA`
upstream_TC362834	1571	2.77e-07	`CTCGTGGTTT`		`T`	`G`	`T`	`G`	`T`	`A`	`G`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`TTTCCTTAAA`
upstream_NM_013607\|NP379	413	3.09e-07	`GTGACTGTGC`		`C`	`G`	`A`	`C`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`AAGTCCCCTT`
upstream_BC004084	635	3.82e-07	`GTACAACAGT`		`T`	`T`	`T`	`G`	`T`	`T`	`G`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`G`	`T`	`T`	`T`	`T`	`TATTAATTAT`
upstream_AK012411	754	4.24e-07	`CCAAAACACT`		`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`G`	`T`	`T`	`C`	`CTATTTTGGA`
upstream_TC393717	1150	4.24e-07	`GCTCAAGTTA`		`T`	`T`	`T`	`T`	`T`	`T`	`G`	`A`	`T`	`T`	`A`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`CTCCTAACCC`
upstream_AF208023\|NP2225	564	4.71e-07	`ATGTTAGATT`		`T`	`T`	`C`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`G`	`G`	`G`	`T`	`T`	`T`	`CTATACCAGA`
upstream_AK088961	593	4.71e-07	`AACTCTTAGA`		`T`	`G`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`G`	`G`	`T`	`A`	`ACACTGCTTT`
upstream_NM_007822\|NP380	436	5.23e-07	`GTGCTGTAGG`		`C`	`C`	`T`	`G`	`T`	`T`	`T`	`T`	`C`	`C`	`T`	`G`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`CAGCCAGTTA`
upstream_BC011110\|NP3749	1321	5.23e-07	`GGCGCCACGT`		`T`	`G`	`C`	`T`	`T`	`T`	`T`	`C`	`T`	`C`	`T`	`T`	`T`	`T`	`C`	`T`	`C`	`T`	`T`	`T`	`TGAAATAGGA`
upstream_AK002297	706	5.23e-07	`ATTATGGTTT`		`T`	`T`	`G`	`G`	`T`	`T`	`T`	`G`	`C`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`AAAAATTTAT`
upstream_TC397218	627	5.23e-07	`AAGATTGTCT`		`T`	`T`	`T`	`A`	`G`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`C`	`T`	`G`	`T`	`T`	`T`	`GGTAACAGAG`
upstream_TC360061	793	5.80e-07	`AAAACCATGA`		`T`	`G`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`G`	`T`	`G`	`A`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TCTGAAAGTT`
upstream_AK045400	1737	6.42e-07	`AATATGGATT`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`C`	`T`	`G`	`A`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`CCCTTCCCCC`
upstream_AK028897	1318	7.11e-07	`GGAGTTTAGG`		`T`	`T`	`T`	`G`	`T`	`T`	`T`	`A`	`T`	`T`	`T`	`A`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`A`	`TTTTATGAGT`
upstream_TC366718	84	7.86e-07	`TAAGTCGAAG`		`T`	`C`	`A`	`G`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`A`	`T`	`T`	`GAAAATAGCT`
upstream_NM_022879\|NP377	413	8.69e-07	`ACTGTACTGA`		`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`A`	`G`	`T`	`C`	`T`	`C`	`T`	`CTTTACACAT`
upstream_BC003733\|NP3237	28	9.59e-07	`TAGCTTCAGA`		`T`	`G`	`A`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`G`	`C`	`T`	`T`	`CAGCCACATA`
upstream_TC362647	111	9.59e-07	`TATTTATTTG`		`N`	`C`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`T`	`A`	`T`	`A`	`TAATTTGATT`
upstream_TC387104	281	9.59e-07	`TCTAGATCCC`		`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`C`	`T`	`T`	`CCTTCCTTTC`
upstream_XM_127811	23	1.06e-06	`ACTTTGCTTC`		`T`	`T`	`C`	`C`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`G`	`T`	`T`	`G`	`T`	`T`	`G`	`T`	`T`	`ATATGAGCTT`
upstream_NM_032398\|NP377	1903	1.06e-06	`CTCTTTGTGA`		`T`	`T`	`T`	`C`	`T`	`T`	`T`	`A`	`T`	`T`	`G`	`T`	`T`	`T`	`C`	`T`	`A`	`T`	`T`	`T`	`CTATTTTTAA`
upstream_TC386282	231	1.06e-06	`TCTTTCTTTC`		`T`	`C`	`T`	`C`	`T`	`T`	`C`	`C`	`T`	`C`	`T`	`C`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`CCAGCCACCC`
upstream_TC366593	1652	1.17e-06	`CAAGGCACCT`		`T`	`C`	`C`	`C`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`G`	`T`	`T`	`GAGGCATTGA`
upstream_NM_152804\|NP527	656	1.29e-06	`CCCTGGTTAT`		`T`	`T`	`T`	`C`	`T`	`T`	`C`	`C`	`T`	`T`	`T`	`C`	`C`	`T`	`G`	`T`	`C`	`T`	`T`	`T`	`CCCCACACTC`
upstream_AK008346	37	1.29e-06	`CACACACTCT`		`T`	`G`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`A`	`T`	`T`	`T`	`T`	`TGAGACGGGG`
upstream_TC369651	1729	1.29e-06	`TGACCTTGAA`		`C`	`T`	`C`	`G`	`T`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`G`	`T`	`T`	`T`	`TTGAACTGTG`
upstream_TC388416	582	1.29e-06	`TAAAATTAAT`		`T`	`T`	`A`	`T`	`G`	`A`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`TAAAAAAAAT`
upstream_TC361950	67	1.41e-06	`TATATCTGAC`		`T`	`T`	`T`	`A`	`T`	`G`	`G`	`G`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`ATGGGAGTCA`
upstream_BC042661	1587	1.56e-06	`CCCAGATTTG`		`T`	`G`	`T`	`C`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`TCAAGATAGG`
upstream_AK048515	330	1.56e-06	`TGGCTGATAC`		`T`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`T`	`C`	`A`	`T`	`T`	`T`	`A`	`T`	`A`	`ATTGATGTAC`
upstream_AK052518	4	1.56e-06	`TTA`		`T`	`T`	`T`	`A`	`T`	`T`	`T`	`G`	`T`	`C`	`T`	`G`	`T`	`T`	`T`	`A`	`T`	`T`	`T`	`A`	`CCTGCAGAAA`
upstream_AK002918	1097	1.56e-06	`GTTTAAAGGG`		`T`	`T`	`T`	`G`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`A`	`G`	`A`	`T`	`T`	`AGAAAAAGTC`
upstream_TC365216	1303	1.71e-06	`GTCAGACTTC`		`C`	`T`	`T`	`G`	`T`	`T`	`G`	`G`	`T`	`T`	`T`	`T`	`T`	`A`	`T`	`G`	`G`	`T`	`T`	`T`	`AGCCCCTCCT`
upstream_AK089911	918	2.06e-06	`TAACCCCCCT`		`T`	`T`	`T`	`T`	`T`	`T`	`G`	`G`	`T`	`T`	`T`	`G`	`A`	`C`	`T`	`G`	`T`	`T`	`T`	`T`	`CTAAAGAGAG`
upstream_AK090130	340	2.26e-06	`TCGTTGTGGG`		`T`	`T`	`T`	`T`	`C`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`T`	`A`	`G`	`T`	`T`	`C`	`T`	`T`	`TACATCAATA`
upstream_AK081550	1040	2.26e-06	`TCTTTTTCAT`		`T`	`T`	`T`	`A`	`T`	`T`	`T`	`A`	`T`	`T`	`T`	`T`	`T`	`A`	`C`	`T`	`A`	`T`	`T`	`T`	`TTTGATGTTT`
upstream_TC360720	1432	2.26e-06	`AAATGGTGGT`		`T`	`T`	`T`	`G`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`G`	`T`	`T`	`A`	`G`	`T`	`GCAACCATCT`
upstream_NM_016695\|NP378	1	2.72e-06			`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`C`	`T`	`T`	`G`	`A`	`T`	`T`	`C`	`T`	`CAAAGCTGTG`
upstream_TC387521	241	2.97e-06	`GAGCTTCCCT`		`T`	`T`	`T`	`C`	`T`	`T`	`C`	`T`	`C`	`T`	`T`	`T`	`C`	`T`	`G`	`T`	`G`	`A`	`T`	`T`	`CTGGGAATGA`
upstream_AK007972	526	3.56e-06	`TCTCTCTCTC`		`T`	`C`	`T`	`C`	`T`	`C`	`T`	`C`	`T`	`C`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`CGGAGCTGGG`
upstream_M76601\|NP059476	1088	3.56e-06	`TGTGGACTTA`		`T`	`T`	`T`	`A`	`T`	`T`	`G`	`A`	`T`	`G`	`T`	`T`	`T`	`A`	`T`	`T`	`C`	`T`	`T`	`T`	`CTTGGAAGGT`
upstream_XM_134059	248	4.24e-06	`GATTTCCCTA`		`G`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`G`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`CCCCTTTGTT`
upstream_TC362352	1115	4.24e-06	`GGAGTGATGG`		`T`	`T`	`T`	`T`	`T`	`A`	`T`	`G`	`C`	`T`	`T`	`C`	`T`	`A`	`T`	`T`	`T`	`T`	`T`	`A`	`GGACAGAAAG`
upstream_NM_026362	1676	5.05e-06	`CACTGTTTGC`		`T`	`T`	`T`	`T`	`G`	`T`	`T`	`C`	`C`	`C`	`T`	`G`	`T`	`T`	`T`	`T`	`C`	`T`	`C`	`T`	`TTGCGATTTG`
upstream_AK003088	533	5.99e-06	`AATGAACGTC`		`T`	`T`	`C`	`C`	`T`	`A`	`G`	`G`	`C`	`T`	`T`	`T`	`T`	`A`	`T`	`T`	`T`	`T`	`T`	`T`	`TGGTCACATG`
upstream_AK080318\|NP5720	450	7.09e-06	`GACCAGCTTA`		`T`	`T`	`T`	`C`	`T`	`T`	`G`	`A`	`T`	`A`	`T`	`T`	`T`	`T`	`C`	`T`	`G`	`T`	`C`	`T`	`CGGATTTGTA`
upstream_NM_009366\|NP381	708	7.70e-06	`TGGGATTCCT`		`T`	`T`	`T`	`C`	`T`	`G`	`T`	`T`	`T`	`T`	`T`	`A`	`T`	`A`	`G`	`T`	`C`	`T`	`T`	`T`	`GGCCACCAGA`
upstream_TC388418	744	7.70e-06	`TGGATTCCTA`		`T`	`G`	`T`	`A`	`C`	`T`	`T`	`T`	`T`	`A`	`T`	`G`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`T`	`CACTTAGCAT`
upstream_TC366567	344	8.37e-06	`GGCCTCCCCC`		`T`	`T`	`C`	`C`	`T`	`T`	`C`	`T`	`T`	`T`	`G`	`C`	`C`	`T`	`C`	`T`	`C`	`T`	`T`	`T`	`GTCTGCCCAT`
upstream_NM_009322\|NP381	1327	9.09e-06	`CGGCTGGAGG`		`T`	`T`	`T`	`G`	`T`	`T`	`G`	`A`	`T`	`T`	`T`	`A`	`T`	`T`	`T`	`A`	`T`	`T`	`T`	`A`	`TTCGTGTAGT`
upstream_TC385242	1303	9.09e-06	`ATGTCGATGG`		`C`	`C`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`C`	`T`	`C`	`T`	`T`	`C`	`T`	`T`	`G`	`AGACAGGGCC`
upstream_NM_030677\|NP415	500	9.86e-06	`TTTTTTAAGA`		`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`A`	`C`	`T`	`T`	`A`	`T`	`A`	`T`	`G`	`CGTACACTGT`
upstream_NM_028715	1309	9.86e-06	`TCAGTCTTAG`		`T`	`T`	`T`	`A`	`T`	`T`	`T`	`G`	`T`	`C`	`T`	`C`	`T`	`T`	`T`	`T`	`G`	`A`	`G`	`T`	`TAGGGTCTCC`
upstream_AK009959	1035	1.07e-05	`GACCTAAATA`		`T`	`T`	`T`	`A`	`T`	`A`	`T`	`T`	`T`	`T`	`T`	`C`	`A`	`T`	`G`	`T`	`T`	`T`	`T`	`A`	`ACATCTCAGT`
upstream_BC046540	777	1.07e-05	`TTTATAAATT`		`T`	`T`	`A`	`T`	`T`	`T`	`T`	`A`	`T`	`T`	`T`	`G`	`A`	`T`	`C`	`T`	`C`	`T`	`C`	`T`	`ATGGGGGAGG`
upstream_TC397076	459	1.07e-05	`CAAGTTATTC`		`T`	`T`	`T`	`T`	`A`	`T`	`C`	`C`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`G`	`G`	`T`	`T`	`T`	`ACTGTCAGTT`
upstream_TC392468	573	1.07e-05	`ACAAACTCCT`		`T`	`G`	`A`	`G`	`T`	`T`	`T`	`A`	`T`	`T`	`T`	`T`	`C`	`T`	`C`	`T`	`T`	`T`	`C`	`T`	`CACACCTAGA`
upstream_TC390617	696	1.25e-05	`TAATCATCAC`		`T`	`T`	`T`	`G`	`T`	`T`	`G`	`T`	`T`	`G`	`T`	`G`	`C`	`T`	`T`	`T`	`C`	`C`	`C`	`T`	`TCTTCTTCAC`
upstream_NM_008553\|NP381	1710	1.36e-05	`GCGGCTGCTT`		`T`	`C`	`C`	`T`	`T`	`T`	`T`	`C`	`C`	`C`	`T`	`T`	`T`	`C`	`C`	`T`	`C`	`T`	`T`	`T`	`TAAAACCGAG`
upstream_AK018172	632	1.47e-05	`CCATGTACAC`		`T`	`T`	`T`	`A`	`C`	`T`	`T`	`T`	`C`	`T`	`G`	`T`	`A`	`T`	`C`	`T`	`G`	`T`	`T`	`T`	`GTAAATCGCT`
upstream_AK041115	598	1.59e-05	`AGGGGGTGGA`		`T`	`T`	`T`	`T`	`T`	`T`	`C`	`C`	`T`	`A`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`G`	`C`	`T`	`TCCTGACACC`
upstream_TC370155	784	1.59e-05	`GCACTCTAAA`		`T`	`T`	`A`	`G`	`T`	`A`	`T`	`C`	`T`	`T`	`T`	`G`	`T`	`T`	`C`	`T`	`C`	`A`	`T`	`T`	`GTATTTCTTG`
upstream_TC389729	279	2.00e-05	`GAGGTGGCGG`		`C`	`T`	`T`	`C`	`C`	`T`	`T`	`T`	`C`	`C`	`T`	`T`	`T`	`T`	`T`	`G`	`C`	`C`	`T`	`T`	`CACTCCAGAC`
upstream_BC048371	1583	2.16e-05	`AACTGAAGGG`		`T`	`T`	`G`	`C`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`G`	`T`	`T`	`T`	`T`	`C`	`C`	`T`	`C`	`CTTAGATGTT`
upstream_TC394660	497	2.16e-05	`CCCCATTCTT`		`C`	`T`	`T`	`T`	`T`	`A`	`G`	`T`	`T`	`T`	`T`	`C`	`C`	`T`	`C`	`T`	`G`	`T`	`G`	`T`	`GTGTTTCTGC`
upstream_TC365728	737	2.16e-05	`GAGTAGGGCC`		`T`	`C`	`T`	`G`	`T`	`A`	`C`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`G`	`T`	`T`	`C`	`TCAATAGGAC`
upstream_AF216832\|NP2286	220	2.33e-05	`TTCTGCCAGG`		`T`	`T`	`T`	`T`	`G`	`T`	`G`	`A`	`T`	`G`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`T`	`G`	`GTCAGTAGGT`
upstream_AK004781	1103	2.51e-05	`CGGTGACCTC`		`T`	`G`	`T`	`C`	`T`	`T`	`T`	`C`	`T`	`T`	`G`	`C`	`C`	`A`	`C`	`T`	`C`	`T`	`T`	`T`	`CCTCTCCTCT`
upstream_TC376940	886	2.51e-05	`GAAGGAACTC`		`T`	`G`	`T`	`A`	`G`	`T`	`T`	`T`	`C`	`C`	`T`	`T`	`T`	`T`	`T`	`G`	`T`	`T`	`C`	`T`	`TCAGTCTGGT`
upstream_AK031699	1552	2.70e-05	`CCCCGGCGCT`		`T`	`G`	`T`	`T`	`T`	`T`	`C`	`G`	`C`	`T`	`T`	`T`	`C`	`C`	`T`	`A`	`G`	`T`	`T`	`T`	`AAGTTTTCCC`
upstream_BC026545\|NP5232	1719	3.13e-05	`AAGATGAGTA`		`C`	`T`	`T`	`T`	`T`	`T`	`T`	`A`	`T`	`T`	`T`	`A`	`C`	`T`	`T`	`A`	`C`	`T`	`C`	`T`	`GGGAGATAAA`
upstream_TC359509	1121	3.13e-05	`TACAATGTCA`		`T`	`T`	`T`	`T`	`T`	`A`	`T`	`T`	`T`	`C`	`T`	`T`	`A`	`T`	`C`	`A`	`G`	`G`	`T`	`T`	`GTGGGAGTGG`
upstream_AK080224	1607	3.37e-05	`ATCTCTATGT`		`C`	`T`	`T`	`T`	`C`	`T`	`G`	`C`	`T`	`T`	`G`	`G`	`T`	`T`	`T`	`T`	`G`	`T`	`G`	`T`	`GTGTGTGTGT`
upstream_AK044357	635	3.62e-05	`ATACCATGTG`		`T`	`G`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`G`	`T`	`G`	`A`	`T`	`T`	`G`	`G`	`G`	`T`	`T`	`ACCTCACTCA`
upstream_AK036188	402	3.62e-05	`ACACCCTTCT`		`C`	`C`	`C`	`C`	`T`	`T`	`T`	`T`	`T`	`A`	`T`	`T`	`T`	`A`	`T`	`G`	`G`	`T`	`T`	`T`	`CCAATAGCTC`
upstream_TC384682	391	4.17e-05	`TCTTTGCCCC`		`T`	`C`	`C`	`T`	`T`	`T`	`C`	`T`	`C`	`T`	`T`	`T`	`C`	`C`	`T`	`T`	`C`	`C`	`T`	`T`	`CCCTCTTCCT`
upstream_TC400611	1747	4.48e-05	`CTTAGGGATC`		`T`	`C`	`C`	`C`	`C`	`A`	`G`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`T`	`A`	`AAAGATTTAC`
upstream_TC365773	1216	4.80e-05	`CTAGCCTTCC`		`T`	`G`	`A`	`C`	`T`	`T`	`G`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`C`	`C`	`CAGCTCACAG`
upstream_TC386012	1611	5.52e-05	`AGATGAACTA`		`T`	`T`	`C`	`C`	`T`	`T`	`C`	`T`	`C`	`T`	`T`	`T`	`T`	`A`	`G`	`G`	`T`	`T`	`T`	`G`	`GGCCCTGGTG`
upstream_AK004716	752	5.91e-05	`TCTCAGAAAG`		`T`	`C`	`T`	`G`	`T`	`T`	`T`	`T`	`T`	`G`	`G`	`G`	`A`	`T`	`C`	`T`	`G`	`C`	`T`	`T`	`GATGAAGCTT`
upstream_AK029481	788	6.33e-05	`TCCTGAACTG`		`C`	`T`	`C`	`A`	`C`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`T`	`C`	`T`	`T`	`T`	`T`	`T`	`A`	`AAGAAAGATT`
upstream_AK079120	454	8.27e-05	`GGCCCCATTC`		`T`	`T`	`T`	`T`	`T`	`G`	`T`	`G`	`T`	`C`	`T`	`T`	`T`	`T`	`G`	`G`	`A`	`T`	`G`	`T`	`ATCTTGCTTC`

Motif 2 block diagrams

Name

Lowest
p-value

Motifs

upstream_AK012953

3.4e-12

upstream_AK043837

3.4e-12

upstream_XM_130324

3.4e-12

upstream_AF162853|NP0449

3.4e-12

upstream_NM_010442|NP379

3.4e-12

upstream_AK017650

3.4e-12

upstream_AK078935

3.4e-12

upstream_AK078033

3.4e-12

upstream_TC388210

3.4e-12

upstream_TC363121

3.4e-12

upstream_TC363231

3.4e-12

upstream_TC393047

3.4e-12

upstream_TC386900

3.4e-12

upstream_AK079196

1.2e-11

upstream_AK042260

1.6e-11

upstream_BC032191

4.8e-11

upstream_TC384367

4.8e-11

upstream_TC369593

4.8e-11

upstream_TC384482

4.8e-11

upstream_AK028989

1.1e-10

upstream_TC365071

1.8e-10

upstream_BC005477

2.1e-10

upstream_TC360054

2.1e-10

upstream_TC359614

2.7e-10

upstream_AK078148

3.4e-10

upstream_TC363599

3.4e-10

upstream_AK004094

7.4e-10

upstream_TC362800

1.5e-09

upstream_AK082317|NP5714

2e-09

upstream_AK049652

3.2e-09

upstream_AK014223

3.7e-09

upstream_TC362258

3.7e-09

upstream_TC386804

4.3e-09

upstream_AK087063

5.7e-09

upstream_NM_009202|NP382

5.7e-09

upstream_TC386307

5.7e-09

upstream_TC362030

5.7e-09

upstream_TC370838

5.7e-09

upstream_AK036394

6.6e-09

upstream_TC409352

8.8e-09

upstream_AK043206

1.3e-08

upstream_AK004829

1.3e-08

upstream_TC363796

1.5e-08

upstream_AK009867

2e-08

upstream_TC392868

2.6e-08

upstream_XM_129469

3e-08

upstream_AK012684

3.3e-08

upstream_TC361311

4.3e-08

upstream_AK030674

4.9e-08

upstream_AK014343

5.5e-08

upstream_AK075609

7e-08

upstream_TC389657

8.9e-08

upstream_AK076663

1.1e-07

upstream_TC402123

1.1e-07

upstream_AK077679

1.4e-07

upstream_AK083155

1.4e-07

upstream_TC390968

1.4e-07

upstream_TC385421

1.4e-07

upstream_AK081484

1.8e-07

upstream_XM_125538

2.2e-07

upstream_TC364953

2.2e-07

upstream_BC038266

2.8e-07

upstream_TC362834

2.8e-07

upstream_NM_013607|NP379

3.1e-07

upstream_BC004084

3.8e-07

upstream_AK012411

4.2e-07

upstream_TC393717

4.2e-07

upstream_AF208023|NP2225

4.7e-07

upstream_AK088961

4.7e-07

upstream_NM_007822|NP380

5.2e-07

upstream_BC011110|NP3749

5.2e-07

upstream_AK002297

5.2e-07

upstream_TC397218

5.2e-07

upstream_TC360061

5.8e-07

upstream_AK045400

6.4e-07

upstream_AK028897

7.1e-07

upstream_TC366718

7.9e-07

upstream_NM_022879|NP377

8.7e-07

upstream_BC003733|NP3237

9.6e-07

upstream_TC362647

9.6e-07

upstream_TC387104

9.6e-07

upstream_XM_127811

1.1e-06

upstream_NM_032398|NP377

1.1e-06

upstream_TC386282

1.1e-06

upstream_TC366593

1.2e-06

upstream_NM_152804|NP527

1.3e-06

upstream_AK008346

1.3e-06

upstream_TC369651

1.3e-06

upstream_TC388416

1.3e-06

upstream_TC361950

1.4e-06

upstream_BC042661

1.6e-06

upstream_AK048515

1.6e-06

upstream_AK052518

1.6e-06

upstream_AK002918

1.6e-06

upstream_TC365216

1.7e-06

upstream_AK089911

2.1e-06

upstream_AK090130

2.3e-06

upstream_AK081550

2.3e-06

upstream_TC360720

2.3e-06

upstream_NM_016695|NP378

2.7e-06

upstream_TC387521

3e-06

upstream_AK007972

3.6e-06

upstream_M76601|NP059476

3.6e-06

upstream_XM_134059

4.2e-06

upstream_TC362352

4.2e-06

upstream_NM_026362

5e-06

upstream_AK003088

6e-06

upstream_AK080318|NP5720

7.1e-06

upstream_NM_009366|NP381

7.7e-06

upstream_TC388418

7.7e-06

upstream_TC366567

8.4e-06

upstream_NM_009322|NP381

9.1e-06

upstream_TC385242

9.1e-06

upstream_NM_030677|NP415

9.9e-06

upstream_NM_028715

9.9e-06

upstream_AK009959

1.1e-05

upstream_BC046540

1.1e-05

upstream_TC397076

1.1e-05

upstream_TC392468

1.1e-05

upstream_TC390617

1.3e-05

upstream_NM_008553|NP381

1.4e-05

upstream_AK018172

1.5e-05

upstream_AK041115

1.6e-05

upstream_TC370155

1.6e-05

upstream_TC389729

2e-05

upstream_BC048371

2.2e-05

upstream_TC394660

2.2e-05

upstream_TC365728

2.2e-05

upstream_AF216832|NP2286

2.3e-05

upstream_AK004781

2.5e-05

upstream_TC376940

2.5e-05

upstream_AK031699

2.7e-05

upstream_BC026545|NP5232

3.1e-05

upstream_TC359509

3.1e-05

upstream_AK080224

3.4e-05

upstream_AK044357

3.6e-05

upstream_AK036188

3.6e-05

upstream_TC384682

4.2e-05

upstream_TC400611

4.5e-05

upstream_TC365773

4.8e-05

upstream_TC386012

5.5e-05

upstream_AK004716

5.9e-05

upstream_AK029481

6.3e-05

upstream_AK079120

8.3e-05

SCALE

\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|
1	25	50	75	100	125	150	175	200	225	250	275	300	325	350	375	400	425	450	475	500	525	550	575	600	625	650	675	700	725	750	775	800	825	850	875	900	925	950	975

Motif 2 in BLOCKS format

BL   MOTIF 2 width=20 seqs=144
upstream_AK012953        (   36) TTTTTTTTTTTTTTTTTTTT  1 
upstream_AK043837        (  521) TTTTTTTTTTTTTTTTTTTT  1 
upstream_XM_130324       (  864) TTTTTTTTTTTTTTTTTTTT  1 
upstream_AF162853|NP0449 (  350) TTTTTTTTTTTTTTTTTTTT  1 
upstream_NM_010442|NP379 ( 1824) TTTTTTTTTTTTTTTTTTTT  1 
upstream_AK017650        ( 1664) TTTTTTTTTTTTTTTTTTTT  1 
upstream_AK078935        ( 1815) TTTTTTTTTTTTTTTTTTTT  1 
upstream_AK078033        ( 1174) TTTTTTTTTTTTTTTTTTTT  1 
upstream_TC388210        (   70) TTTTTTTTTTTTTTTTTTTT  1 
upstream_TC363121        (    3) TTTTTTTTTTTTTTTTTTTT  1 
upstream_TC363231        (  493) TTTTTTTTTTTTTTTTTTTT  1 
upstream_TC393047        ( 1703) TTTTTTTTTTTTTTTTTTTT  1 
upstream_TC386900        ( 1507) TTTTTTTTTTTTTTTTTTTT  1 
upstream_AK079196        (  405) TTTCTTTTTTTTTTTTTTTT  1 
upstream_AK042260        ( 1732) TTTTTTTTTTTTTTTTCTTT  1 
upstream_BC032191        ( 1167) TTTTTTTTTTTGTTTTGTTT  1 
upstream_TC384367        ( 1507) TCTTTTTTTTTTTTTTTTTT  1 
upstream_TC369593        (  213) TCTTTTTTTTTTTTTTTTTT  1 
upstream_TC384482        ( 1922) TCTTTTTTTTTTTTTTTTTT  1 
upstream_AK028989        (  433) TTCTTTTTTTTTTTTTTTTT  1 
upstream_TC365071        (    2) TTTCTTTTTTTCTTTTTTTT  1 
upstream_BC005477        (  958) TTTTTTTTTTTCTTTTCTTT  1 
upstream_TC360054        (  783) TTTCTTTTTCTTTTTTTTTT  1 
upstream_TC359614        ( 1510) TCTGTTTTTTTTTTTTTTTT  1 
upstream_AK078148        ( 1408) TTTTTTTGTTTGTTTTGTTT  1 
upstream_TC363599        (  701) TTTTTTTTTTTTTTTTTATT  1 
upstream_AK004094        ( 1453) CCTTTTTTTTTTTTTTTTTT  1 
upstream_TC362800        (  675) TTTTTTTTTTTTTTTTGGTT  1 
upstream_AK082317|NP5714 (  792) TTTTTTTTCTTTCTTTCTTT  1 
upstream_AK049652        (  966) TTTTCTTTTTTCTTTTTTTT  1 
upstream_AK014223        ( 1335) TTTTTTGTTTTGCTTTGTTT  1 
upstream_TC362258        ( 1917) TTTTTTTTTTGGTTCTTTTT  1 
upstream_TC386804        ( 1563) CTTTTTTGTTTGTTTTCTTT  1 
upstream_AK087063        ( 1689) TTTCTTTTCTTTCTTTCTTT  1 
upstream_NM_009202|NP382 ( 1613) TTTGTTTGTTTGTTTGTTTT  1 
upstream_TC386307        (  230) TTTTTTTGTTTGTTTTTTTG  1 
upstream_TC362030        ( 1434) TTTGTTTGTTTGTTTGTTTT  1 
upstream_TC370838        (  634) TTTGTTTGTTTGTTTGTTTT  1 
upstream_AK036394        ( 1536) TGTCTTTTTTTTTTTTTTTA  1 
upstream_TC409352        (  998) TTTGTTTTCGTTTTTTTTTT  1 
upstream_AK043206        (   21) TTATTTTGTTTGTTTTGTTT  1 
upstream_AK004829        (  222) TTTTTTGTTTTGTTTTGCTT  1 
upstream_TC363796        (   63) TGTATTCTTTTTTTTTTTTT  1 
upstream_AK009867        (  120) CCTTTTGGTTTTTTTTTTTT  1 
upstream_TC392868        (  821) CTTTTTTTTCTGTTCTGTTT  1 
upstream_XM_129469       (  791) TTTGTTGGTTGTTTTTTTTT  1 
upstream_AK012684        (  499) TTTGTTTGTTTGTTTTGCTT  1 
upstream_TC361311        (  794) TTTTTTTCTTTCCTCTGTTT  1 
upstream_AK030674        ( 1640) TTTCTTTTTTTTTTTAATTT  1 
upstream_AK014343        (  625) TTTCCTTTCCTTTTTTTTTT  1 
upstream_AK075609        (  521) TTTTTGTTTTTGTTTTTTTG  1 
upstream_TC389657        ( 1617) CCTTTTTTCTTCTTTTCTTT  1 
upstream_AK076663        (  350) TTTCTATCCTTTTTTTCTTT  1 
upstream_TC402123        ( 1680) CTCTTTTTTTTTTTCTTTCT  1 
upstream_AK077679        (  438) TTTGTTTGTTTGTTTGTTTG  1 
upstream_AK083155        ( 1249) CTTCTTTTCTTTCTCTCTTT  1 
upstream_TC390968        (  771) TGCCTTTCTTTCTTTTTTTT  1 
upstream_TC385421        ( 1095) TTTCTTTCTTTCCTTTTTTA  1 
upstream_AK081484        ( 1214) TCTCTTCTTTTTCTCTCTTT  1 
upstream_XM_125538       ( 1113) CTTTTTTTTTTTTCCTTTTA  1 
upstream_TC364953        ( 1095) TCTATTTTCCTGTTTTCTTT  1 
upstream_BC038266        (  706) CCTTTTTTTCTTTTCTTTTA  1 
upstream_TC362834        ( 1571) TGTGTAGTTTTGTTTTGTTT  1 
upstream_NM_013607|NP379 (  413) CGACTTGTTTTTTTTTTTTT  1 
upstream_BC004084        (  635) TTTGTTGTTGTTTTGGTTTT  1 
upstream_AK012411        (  754) TTTGTTTGTTTGTTTGGTTC  1 
upstream_TC393717        ( 1150) TTTTTTGATTATTTTTTTTT  1 
upstream_AF208023|NP2225 (  564) TTCCTTTTTTTTCTGGGTTT  1 
upstream_AK088961        (  593) TGTTTTTTTTTTTTCTGGTA  1 
upstream_NM_007822|NP380 (  436) CCTGTTTTCCTGTTTTCTTT  1 
upstream_BC011110|NP3749 ( 1321) TGCTTTTCTCTTTTCTCTTT  1 
upstream_AK002297        (  706) TTGGTTTGCTTTTTCTTTTT  1 
upstream_TC397218        (  627) TTTAGTGTTTTGTTCTGTTT  1 
upstream_TC360061        (  793) TGTTTTTCTGTGATTTTTTT  1 
upstream_AK045400        ( 1737) TTTTTTTGTCTGATTTTTGT  1 
upstream_AK028897        ( 1318) TTTGTTTATTTATTTTGTTA  1 
upstream_TC366718        (   84) TCAGTTTTTTTTCTTTTATT  1 
upstream_NM_022879|NP377 (  413) TTTTTTCTTTTTTAGTCTCT  1 
upstream_BC003733|NP3237 (   28) TGATTTTTTTTTTTGTGCTT  1 
upstream_TC362647        (  111) XCTTTTGTTTTGTTTTTATA  1 
upstream_TC387104        (  281) TTTTTCTTTCTTTTCTTCTT  1 
upstream_XM_127811       (   23) TTCCTTTCTTTGTTGTTGTT  1 
upstream_NM_032398|NP377 ( 1903) TTTCTTTATTGTTTCTATTT  1 
upstream_TC386282        (  231) TCTCTTCCTCTCTTTTCTTT  1 
upstream_TC366593        ( 1652) TCCCTTTGTTTGTTTTGGTT  1 
upstream_NM_152804|NP527 (  656) TTTCTTCCTTTCCTGTCTTT  1 
upstream_AK008346        (   37) TGTTGTTTTTGTTTTATTTT  1 
upstream_TC369651        ( 1729) CTCGTTTTTTGTTTTGGTTT  1 
upstream_TC388416        (  582) TTATGATTTTTCTTTTTTTT  1 
upstream_TC361950        (   67) TTTATGGGCTTTTTTTCTTT  1 
upstream_BC042661        ( 1587) TGTCTGTTTTGTTTTGTTTT  1 
upstream_AK048515        (  330) TTTTTTGTTTTTCATTTATA  1 
upstream_AK052518        (    4) TTTATTTGTCTGTTTATTTA  1 
upstream_AK002918        ( 1097) TTTGTTCTTTTTTTCAGATT  1 
upstream_TC365216        ( 1303) CTTGTTGGTTTTTATGGTTT  1 
upstream_AK089911        (  918) TTTTTTGGTTTGACTGTTTT  1 
upstream_AK090130        (  340) TTTTCTTGTTTTTAGTTCTT  1 
upstream_AK081550        ( 1040) TTTATTTATTTTTACTATTT  1 
upstream_TC360720        ( 1432) TTTGTTGTTTTGTTGTTAGT  1 
upstream_NM_016695|NP378 (    1) TTTTTTTTTGTCTTGATTCT  1 
upstream_TC387521        (  241) TTTCTTCTCTTTCTGTGATT  1 
upstream_AK007972        (  526) TCTCTCTCTCTTCTTTTTTT  1 
upstream_M76601|NP059476 ( 1088) TTTATTGATGTTTATTCTTT  1 
upstream_XM_134059       (  248) GTTTTTGTTTTGCTTTTTTC  1 
upstream_TC362352        ( 1115) TTTTTATGCTTCTATTTTTA  1 
upstream_NM_026362       ( 1676) TTTTGTTCCCTGTTTTCTCT  1 
upstream_AK003088        (  533) TTCCTAGGCTTTTATTTTTT  1 
upstream_AK080318|NP5720 (  450) TTTCTTGATATTTTCTGTCT  1 
upstream_NM_009366|NP381 (  708) TTTCTGTTTTTATAGTCTTT  1 
upstream_TC388418        (  744) TGTACTTTTATGTTGTTTTT  1 
upstream_TC366567        (  344) TTCCTTCTTTGCCTCTCTTT  1 
upstream_NM_009322|NP381 ( 1327) TTTGTTGATTTATTTATTTA  1 
upstream_TC385242        ( 1303) CCTTTTTGTTTCTCTTCTTG  1 
upstream_NM_030677|NP415 (  500) TTTTTTTTTTTACTTATATG  1 
upstream_NM_028715       ( 1309) TTTATTTGTCTCTTTTGAGT  1 
upstream_AK009959        ( 1035) TTTATATTTTTCATGTTTTA  1 
upstream_BC046540        (  777) TTATTTTATTTGATCTCTCT  1 
upstream_TC397076        (  459) TTTTATCCTTTCTTTGGTTT  1 
upstream_TC392468        (  573) TGAGTTTATTTTCTCTTTCT  1 
upstream_TC390617        (  696) TTTGTTGTTGTGCTTTCCCT  1 
upstream_NM_008553|NP381 ( 1710) TCCTTTTCCCTTTCCTCTTT  1 
upstream_AK018172        (  632) TTTACTTTCTGTATCTGTTT  1 
upstream_AK041115        (  598) TTTTTTCCTATTTTCTTGCT  1 
upstream_TC370155        (  784) TTAGTATCTTTGTTCTCATT  1 
upstream_TC389729        (  279) CTTCCTTTCCTTTTTGCCTT  1 
upstream_BC048371        ( 1583) TTGCTTTTCTTGTTTTCCTC  1 
upstream_TC394660        (  497) CTTTTAGTTTTCCTCTGTGT  1 
upstream_TC365728        (  737) TCTGTACTCTTTTTCTGTTC  1 
upstream_AF216832|NP2286 (  220) TTTTGTGATGTTTTTGTTTG  1 
upstream_AK004781        ( 1103) TGTCTTTCTTGCCACTCTTT  1 
upstream_TC376940        (  886) TGTAGTTTCCTTTTTGTTCT  1 
upstream_AK031699        ( 1552) TGTTTTCGCTTTCCTAGTTT  1 
upstream_BC026545|NP5232 ( 1719) CTTTTTTATTTACTTACTCT  1 
upstream_TC359509        ( 1121) TTTTTATTTCTTATCAGGTT  1 
upstream_AK080224        ( 1607) CTTTCTGCTTGGTTTTGTGT  1 
upstream_AK044357        (  635) TGTTTTTCTGTGATTGGGTT  1 
upstream_AK036188        (  402) CCCCTTTTTATTTATGGTTT  1 
upstream_TC384682        (  391) TCCTTTCTCTTTCCTTCCTT  1 
upstream_TC400611        ( 1747) TCCCCAGTCTTTTTTTTTTA  1 
upstream_TC365773        ( 1216) TGACTTGTTCTTTTCTTTCC  1 
upstream_TC386012        ( 1611) TTCCTTCTCTTTTAGGTTTG  1 
upstream_AK004716        (  752) TCTGTTTTTGGGATCTGCTT  1 
upstream_AK029481        (  788) CTCACTCTTTTTTCTTTTTA  1 
upstream_AK079120        (  454) TTTTTGTGTCTTTTGGATGT  1 
//

Motif 2 position-specific scoring matrix

log-odds matrix: alength= 4 w= 20 n= 397046 bayes= 12.2767 E= 1.8e-211 
  -716    -77   -476    167 
 -1381    -59    -90    142 
  -206   -111   -407    160 
  -153     -7    -42     92 
  -522   -194   -248    173 
  -177   -411   -275    171 
 -1381   -120    -37    142 
  -177    -94    -37    121 
 -1381    -47  -1381    163 
  -323    -79   -190    153 
  -522  -1381   -161    178 
  -290    -86     18    109 
  -206    -59  -1381    154 
  -164   -230  -1381    170 
 -1381    -20   -116    136 
  -190  -1381    -82    158 
  -323    -20     -2    100 
  -190   -179   -226    160 
 -1381   -153   -248    171 
  -142   -279   -226    162

Motif 2 position-specific probability matrix

letter-probability matrix: alength= 4 w= 20 n= 397046 E= 1.8e-211 
 0.001823  0.140562  0.008579  0.849037 
 0.000018  0.159728  0.125008  0.715247 
 0.062514  0.111120  0.013904  0.812462 
 0.090290  0.229167  0.173615  0.506928 
 0.006962  0.062512  0.041680  0.888846 
 0.076402  0.013905  0.034736  0.874958 
 0.000018  0.104176  0.180559  0.715247 
 0.076402  0.125008  0.180559  0.618031 
 0.000018  0.173616  0.000016  0.826350 
 0.027794  0.138896  0.062512  0.770798 
 0.006962  0.000017  0.076400  0.916622 
 0.034738  0.131952  0.263887  0.569423 
 0.062514  0.159728  0.000016  0.777742 
 0.083346  0.048624  0.000016  0.868014 
 0.000018  0.208336  0.104176  0.687471 
 0.069458  0.000017  0.131951  0.798574 
 0.027794  0.208336  0.229167  0.534704 
 0.069458  0.069456  0.048624  0.812462 
 0.000018  0.083344  0.041680  0.874958 
 0.097234  0.034736  0.048624  0.819406






Time 64047.17 secs.

P N
MOTIF 3 width = 20 sites = 70 llr = 1227 E-value = 1.6e-192

NAME	START	P-VALUE				SITES
			Simplified	A	1	:	:	:	:	1	2	8	:	1	:	7	4	:	:	:	a	:	:	2
			pos.-specific	C	:	6	:	:	:	:	:	:	2	2	:	:	:	a	3	9	:	:	1	:
			probability	G	9	:	:	9	9	8	8	:	2	2	4	3	6	:	:	:	:	a	4	7
			matrix	T	:	4	a	:	:	:	:	1	6	5	5	:	:	:	7	:	:	:	5	1
.
			bits	2.1
				1.9
				1.7
				1.5
			Information	1.3
			content	1.1
			(25.3 bits)	0.8
				0.6
				0.4
				0.2
				0.0
.
			Multilevel		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`
			consensus			`T`					`A`		`C`	`C`	`G`	`G`	`A`		`C`				`G`
			sequence

.

upstream_AK077679	1014	1.44e-12	`TTTGGTGGGG`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCGCT`
upstream_AK003088	608	1.44e-12	`GTATGGAGGG`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCGCT`
upstream_NM_032398\|NP377	952	1.44e-12	`ATTAAGGGGG`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCGCT`
upstream_AK080224	903	7.29e-12	`AGCCTCAGGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGGGCT`
upstream_AK007972	133	7.29e-12	`AGATCAAGGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCGCT`
upstream_AK002559	138	7.29e-12	`TAATTTAAGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCGCT`
upstream_BC046540	595	7.29e-12	`TCCTCTGGGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCGCT`
upstream_AK009867	373	7.29e-12	`ATTGCATGGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCGCT`
upstream_AK036394	1116	7.29e-12	`CTGCTCTTGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCGCT`
upstream_TC384367	1609	7.29e-12	`TGATAACGGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCGCT`
upstream_TC365071	1797	7.29e-12	`TTTATTTGGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAAAGCATT`
upstream_TC385849	438	7.29e-12	`CACCTCTGGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCACT`
upstream_TC384482	495	7.29e-12	`AATAATAGGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGTGCT`
upstream_TC365371	624	4.28e-11	`AAGGCCTGGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`G`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCGCT`
upstream_XM_130324	408	5.64e-11	`TAAAATGGGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`G`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGTGCT`
upstream_AK028897	1667	5.64e-11	`GTGAAGGGGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`G`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCGCT`
upstream_TC390617	202	5.64e-11	`GCATGTTGGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`G`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCGCT`
upstream_AW144421	1171	5.64e-11	`GAATCCAGGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`G`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCGCT`
upstream_NM_022879\|NP377	509	1.39e-10	`CTCATATGGG`		`G`	`T`	`T`	`G`	`G`	`G`	`A`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCGCT`
upstream_AK002679	532	1.89e-10	`AAGAATGTTT`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`G`	`T`	`G`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`TAGAACACTT`
upstream_TC366567	1232	2.80e-10	`TCCCTCGAGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`C`	`G`	`GTAGAGTGCT`
upstream_TC363599	456	3.55e-10	`TTTTTTGGGG`		`G`	`C`	`G`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`G`	`G`	`GTGGACCCTT`
upstream_BC038266	616	4.64e-10	`TTTTTTCGGA`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`C`	`C`	`G`	`A`	`A`	`C`	`C`	`C`	`A`	`G`	`G`	`G`	`CCTTGCGCTT`
upstream_AK042260	651	4.64e-10	`TTTTTTTTGA`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`C`	`C`	`G`	`A`	`A`	`C`	`C`	`C`	`A`	`G`	`G`	`G`	`CCTTGTGCTT`
upstream_AF162853\|NP0449	1647	4.64e-10	`TTTTTTCGGA`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`C`	`C`	`G`	`A`	`A`	`C`	`C`	`C`	`A`	`G`	`G`	`G`	`CCTTGCGCTT`
upstream_AK028989	469	4.64e-10	`TTTTTTCGGA`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`C`	`C`	`G`	`A`	`A`	`C`	`C`	`C`	`A`	`G`	`G`	`G`	`CCTTGCGCTT`
upstream_AK002297	6	4.64e-10	`CTGGA`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`C`	`C`	`G`	`A`	`A`	`C`	`C`	`C`	`A`	`G`	`G`	`G`	`CCTTGCGCTT`
upstream_TC389657	1645	4.64e-10	`TTTGTTCAGA`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`C`	`C`	`G`	`A`	`A`	`C`	`C`	`C`	`A`	`G`	`G`	`G`	`CCTTGTGCTT`
upstream_TC362258	1944	4.64e-10	`TTTTTTTGGA`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`C`	`C`	`G`	`A`	`A`	`C`	`C`	`C`	`A`	`G`	`G`	`G`	`CCTTGCGCTT`
upstream_TC363121	1336	4.64e-10	`TTTTTTCGGA`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`C`	`C`	`G`	`A`	`A`	`C`	`C`	`C`	`A`	`G`	`G`	`G`	`CCTTGCGCTT`
upstream_TC363231	524	4.64e-10	`TTTTTCCGGA`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`C`	`C`	`G`	`A`	`A`	`C`	`C`	`C`	`A`	`G`	`G`	`G`	`CCTTGCGCTT`
upstream_TC386900	1537	4.64e-10	`TTTTTCCGGA`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`C`	`C`	`G`	`A`	`A`	`C`	`C`	`C`	`A`	`G`	`G`	`G`	`CCTAGCAAGC`
upstream_TC362800	707	4.64e-10	`TTTTTTCGGA`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`C`	`C`	`G`	`A`	`A`	`C`	`C`	`C`	`A`	`G`	`G`	`G`	`CCTTGCGCTT`
upstream_AK018172	880	7.43e-10	`TAACGTTAGG`		`G`	`T`	`T`	`G`	`G`	`A`	`G`	`A`	`T`	`T`	`T`	`G`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCGCT`
upstream_TC402123	254	8.35e-10	`AAATCTAGGG`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`G`	`A`	`T`	`G`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTTAAGAGCA`
upstream_AK012953	165	9.29e-10	`CCATGTGGTT`		`G`	`C`	`T`	`G`	`G`	`G`	`A`	`A`	`T`	`T`	`G`	`A`	`A`	`C`	`T`	`C`	`A`	`G`	`G`	`A`	`CCTCTGGAAG`
upstream_TC400611	1873	9.29e-10	`CCATGTGGTT`		`G`	`C`	`T`	`G`	`G`	`G`	`A`	`A`	`T`	`T`	`G`	`A`	`A`	`C`	`T`	`C`	`A`	`G`	`G`	`A`	`CCTCTGGAAG`
upstream_XM_125538	1151	1.63e-09	`GTAAGGCGGG`		`G`	`T`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`T`	`A`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCGCT`
upstream_TC388210	193	2.22e-09	`CCATGTGGTT`		`G`	`C`	`T`	`G`	`G`	`G`	`A`	`A`	`T`	`G`	`G`	`A`	`A`	`C`	`T`	`C`	`A`	`G`	`G`	`A`	`CCTCTGGAAG`
upstream_TC386012	983	2.22e-09	`CCAATGACAG`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`G`	`T`	`G`	`T`	`G`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTAGAGCCCC`
upstream_AK012411	1443	5.44e-09	`GTGTGTGGTT`		`G`	`C`	`T`	`G`	`G`	`G`	`A`	`A`	`T`	`G`	`G`	`A`	`A`	`C`	`T`	`C`	`A`	`G`	`G`	`T`	`TCTCTACAAA`
upstream_TC360720	1322	5.44e-09	`GTTGTGATCA`		`G`	`C`	`T`	`G`	`G`	`G`	`A`	`A`	`T`	`T`	`G`	`A`	`A`	`C`	`T`	`C`	`A`	`G`	`G`	`C`	`AGCTGAACCC`
upstream_AK004829	97	5.97e-09	`TGCCAAAAAG`		`G`	`C`	`T`	`G`	`G`	`A`	`G`	`G`	`T`	`G`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GCAGAGCACT`
upstream_AK049692	846	5.97e-09	`GTCTCTTGGG`		`G`	`C`	`T`	`G`	`G`	`A`	`G`	`A`	`G`	`A`	`T`	`G`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTTAAGAGCA`
upstream_AK029481	913	5.97e-09	`CCATGTGGTT`		`G`	`C`	`T`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`G`	`A`	`A`	`C`	`T`	`C`	`A`	`G`	`G`	`A`	`CCTCTGGAAG`
upstream_TC370838	1706	5.97e-09	`GCCATTCTGG`		`G`	`C`	`T`	`G`	`G`	`A`	`G`	`A`	`G`	`A`	`T`	`G`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GTTAAGAGCA`
upstream_AK017650	132	7.27e-09	`CCATGCGGTT`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`T`	`C`	`T`	`G`	`G`	`A`	`C`	`T`	`C`	`A`	`G`	`G`	`A`	`CCTCTGGAAG`
upstream_AK082317\|NP5714	819	1.24e-08	`TTTTTTTGGA`		`G`	`C`	`T`	`G`	`A`	`G`	`G`	`A`	`C`	`C`	`G`	`A`	`A`	`C`	`C`	`C`	`A`	`G`	`G`	`G`	`CCTTGCACTT`
upstream_AK014223	520	1.48e-08	`ATCTATACAA`		`G`	`C`	`T`	`G`	`G`	`T`	`G`	`A`	`T`	`T`	`G`	`A`	`A`	`C`	`C`	`C`	`A`	`G`	`G`	`A`	`CCTTGGATGT`
upstream_TC364351	121	1.90e-08	`AAGACCTAAA`		`G`	`C`	`T`	`G`	`A`	`G`	`G`	`A`	`G`	`A`	`T`	`G`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GGTTGGAGAG`
upstream_TC360061	1292	2.63e-08	`TCATGCGCTG`		`A`	`T`	`T`	`G`	`G`	`G`	`A`	`A`	`T`	`T`	`G`	`A`	`A`	`C`	`T`	`C`	`A`	`G`	`G`	`A`	`CTTCTGAAAG`
upstream_TC365315	1002	3.35e-08	`CACAAGAGGG`		`G`	`C`	`T`	`G`	`G`	`A`	`G`	`A`	`G`	`A`	`T`	`G`	`G`	`C`	`T`	`C`	`A`	`G`	`C`	`G`	`GTTAAGAGCA`
upstream_XM_127811	713	4.92e-08	`CTCTGTGGGT`		`G`	`C`	`T`	`G`	`G`	`G`	`A`	`A`	`C`	`T`	`G`	`A`	`G`	`C`	`T`	`T`	`A`	`G`	`G`	`T`	`CACCTCAGAA`
upstream_AK089911	483	8.89e-08	`CCACATGGGT`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`C`	`C`	`C`	`A`	`A`	`C`	`C`	`C`	`A`	`G`	`G`	`T`	`CCTTTGCAAG`
upstream_AK078148	1679	8.89e-08	`TGATATAGGT`		`G`	`C`	`T`	`G`	`G`	`G`	`A`	`A`	`T`	`T`	`G`	`A`	`A`	`C`	`T`	`C`	`A`	`A`	`G`	`T`	`ACAAGAGCAA`
upstream_NM_030677\|NP415	600	1.03e-07	`TCATGTGGTT`		`G`	`C`	`T`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`G`	`A`	`G`	`C`	`T`	`G`	`A`	`G`	`G`	`A`	`CTTCTGGAAG`
upstream_TC369651	1004	1.18e-07	`ATGTAGGACG`		`A`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`G`	`G`	`T`	`G`	`G`	`C`	`T`	`C`	`C`	`G`	`T`	`G`	`GTTAAAGCGC`
upstream_TC388416	1100	1.45e-07	`TCATATGGTT`		`G`	`C`	`T`	`G`	`G`	`G`	`A`	`T`	`T`	`T`	`G`	`A`	`A`	`C`	`T`	`C`	`G`	`G`	`G`	`A`	`CCTCTGGAAG`
upstream_BC013628\|NP3923	1715	1.55e-07	`AACCTAAGGT`		`G`	`T`	`T`	`G`	`G`	`G`	`A`	`T`	`G`	`T`	`G`	`G`	`G`	`C`	`T`	`C`	`A`	`G`	`C`	`A`	`CGTGCAAGGC`
upstream_AK004716	1366	1.55e-07	`AAAATCGAGG`		`G`	`C`	`T`	`A`	`G`	`G`	`G`	`A`	`T`	`G`	`T`	`A`	`G`	`C`	`T`	`T`	`A`	`G`	`T`	`T`	`GGTAGAATGC`
upstream_TC387299	880	2.46e-07	`CACACACGGG`		`G`	`T`	`T`	`A`	`G`	`A`	`G`	`A`	`G`	`C`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`A`	`G`	`GTTAAGTGCA`
upstream_TC361311	1350	2.62e-07	`GAGAACCCGG`		`G`	`C`	`G`	`G`	`G`	`G`	`G`	`T`	`T`	`G`	`G`	`G`	`A`	`C`	`T`	`C`	`C`	`G`	`G`	`G`	`CCGGCATGGC`
upstream_BC032191	879	2.80e-07	`TGTGATGCAG`		`G`	`C`	`T`	`G`	`C`	`T`	`G`	`A`	`G`	`G`	`G`	`G`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`GCTAAAGGCA`
upstream_AK079120	1967	3.38e-07	`CTTCGATGAT`		`G`	`C`	`T`	`G`	`G`	`G`	`G`	`A`	`T`	`G`	`G`	`A`	`A`	`T`	`C`	`C`	`A`	`G`	`A`	`A`	`CTTAGGATAT`
upstream_TC393047	791	3.38e-07	`TGGGAATGGG`		`A`	`A`	`T`	`G`	`G`	`G`	`G`	`T`	`T`	`G`	`G`	`A`	`A`	`C`	`C`	`C`	`A`	`G`	`G`	`G`	`TACCCAGACA`
upstream_AK036188	1253	3.59e-07	`AAAGGGGTGG`		`A`	`T`	`G`	`G`	`G`	`A`	`G`	`A`	`G`	`A`	`T`	`A`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`G`	`AGTCAAGTGC`
upstream_TC365773	1143	3.82e-07	`AGCAGGAGGT`		`G`	`C`	`T`	`G`	`G`	`G`	`A`	`T`	`C`	`C`	`T`	`A`	`G`	`C`	`C`	`C`	`A`	`G`	`C`	`C`	`AGGGGCTGCC`
upstream_TC392868	1600	5.49e-07	`TTTCCTGAAG`		`G`	`T`	`T`	`G`	`G`	`A`	`T`	`A`	`G`	`A`	`T`	`G`	`G`	`C`	`T`	`C`	`A`	`G`	`T`	`A`	`GTTAAAGCAT`
upstream_AK029065	922	6.93e-07	`CGTTCCTTTG`		`G`	`C`	`T`	`C`	`A`	`G`	`G`	`T`	`G`	`G`	`T`	`A`	`G`	`C`	`C`	`C`	`A`	`G`	`G`	`G`	`CTGGCTTTAG`
upstream_AK053076	499	1.09e-06	`AGTGGTGTGG`		`G`	`C`	`T`	`A`	`G`	`A`	`G`	`G`	`C`	`T`	`G`	`G`	`G`	`C`	`T`	`T`	`A`	`G`	`G`	`G`	`CTAGACAGGA`

Motif 3 block diagrams

Name

Lowest
p-value

Motifs

upstream_AK077679

1.4e-12

upstream_AK003088

1.4e-12

upstream_NM_032398|NP377

1.4e-12

upstream_AK080224

7.3e-12

upstream_AK007972

7.3e-12

upstream_AK002559

7.3e-12

upstream_BC046540

7.3e-12

upstream_AK009867

7.3e-12

upstream_AK036394

7.3e-12

upstream_TC384367

7.3e-12

upstream_TC365071

7.3e-12

upstream_TC385849

7.3e-12

upstream_TC384482

7.3e-12

upstream_TC365371

4.3e-11

upstream_XM_130324

5.6e-11

upstream_AK028897

5.6e-11

upstream_TC390617

5.6e-11

upstream_AW144421

5.6e-11

upstream_NM_022879|NP377

1.4e-10

upstream_AK002679

1.9e-10

upstream_TC366567

2.8e-10

upstream_TC363599

3.5e-10

upstream_BC038266

4.6e-10

upstream_AK042260

4.6e-10

upstream_AF162853|NP0449

4.6e-10

upstream_AK028989

4.6e-10

upstream_AK002297

4.6e-10

upstream_TC389657

4.6e-10

upstream_TC362258

4.6e-10

upstream_TC363121

4.6e-10

upstream_TC363231

4.6e-10

upstream_TC386900

4.6e-10

upstream_TC362800

4.6e-10

upstream_AK018172

7.4e-10

upstream_TC402123

8.4e-10

upstream_AK012953

9.3e-10

upstream_TC400611

9.3e-10

upstream_XM_125538

1.6e-09

upstream_TC388210

2.2e-09

upstream_TC386012

2.2e-09

upstream_AK012411

5.4e-09

upstream_TC360720

5.4e-09

upstream_AK004829

6e-09

upstream_AK049692

6e-09

upstream_AK029481

6e-09

upstream_TC370838

6e-09

upstream_AK017650

7.3e-09

upstream_AK082317|NP5714

1.2e-08

upstream_AK014223

1.5e-08

upstream_TC364351

1.9e-08

upstream_TC360061

2.6e-08

upstream_TC365315

3.4e-08

upstream_XM_127811

4.9e-08

upstream_AK089911

8.9e-08

upstream_AK078148

8.9e-08

upstream_NM_030677|NP415

1e-07

upstream_TC369651

1.2e-07

upstream_TC388416

1.4e-07

upstream_BC013628|NP3923

1.6e-07

upstream_AK004716

1.6e-07

upstream_TC387299

2.5e-07

upstream_TC361311

2.6e-07

upstream_BC032191

2.8e-07

upstream_AK079120

3.4e-07

upstream_TC393047

3.4e-07

upstream_AK036188

3.6e-07

upstream_TC365773

3.8e-07

upstream_TC392868

5.5e-07

upstream_AK029065

6.9e-07

upstream_AK053076

1.1e-06

SCALE

\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|	\|
1	25	50	75	100	125	150	175	200	225	250	275	300	325	350	375	400	425	450	475	500	525	550	575	600	625	650	675	700	725	750	775	800	825	850	875	900	925	950	975

Motif 3 in BLOCKS format

BL   MOTIF 3 width=20 seqs=70
upstream_AK077679        ( 1014) GCTGGGGATTTAGCTCAGTG  1 
upstream_AK003088        (  608) GCTGGGGATTTAGCTCAGTG  1 
upstream_NM_032398|NP377 (  952) GCTGGGGATTTAGCTCAGTG  1 
upstream_AK080224        (  903) GTTGGGGATTTAGCTCAGTG  1 
upstream_AK007972        (  133) GTTGGGGATTTAGCTCAGTG  1 
upstream_AK002559        (  138) GTTGGGGATTTAGCTCAGTG  1 
upstream_BC046540        (  595) GTTGGGGATTTAGCTCAGTG  1 
upstream_AK009867        (  373) GTTGGGGATTTAGCTCAGTG  1 
upstream_AK036394        ( 1116) GTTGGGGATTTAGCTCAGTG  1 
upstream_TC384367        ( 1609) GTTGGGGATTTAGCTCAGTG  1 
upstream_TC365071        ( 1797) GTTGGGGATTTAGCTCAGTG  1 
upstream_TC385849        (  438) GTTGGGGATTTAGCTCAGTG  1 
upstream_TC384482        (  495) GTTGGGGATTTAGCTCAGTG  1 
upstream_TC365371        (  624) GTTGGGGATGTAGCTCAGTG  1 
upstream_XM_130324       (  408) GTTGGGGATTTGGCTCAGTG  1 
upstream_AK028897        ( 1667) GTTGGGGATTTGGCTCAGTG  1 
upstream_TC390617        (  202) GTTGGGGATTTGGCTCAGTG  1 
upstream_AW144421        ( 1171) GTTGGGGATTTGGCTCAGTG  1 
upstream_NM_022879|NP377 (  509) GTTGGGAATTTAGCTCAGTG  1 
upstream_AK002679        (  532) GTTGGGGATGTGGCTCAGTG  1 
upstream_TC366567        ( 1232) GTTGGGGATTTAGCTCAGCG  1 
upstream_TC363599        (  456) GCGGGGGATTTAGCTCAGGG  1 
upstream_BC038266        (  616) GCTGGGGACCGAACCCAGGG  1 
upstream_AK042260        (  651) GCTGGGGACCGAACCCAGGG  1 
upstream_AF162853|NP0449 ( 1647) GCTGGGGACCGAACCCAGGG  1 
upstream_AK028989        (  469) GCTGGGGACCGAACCCAGGG  1 
upstream_AK002297        (    6) GCTGGGGACCGAACCCAGGG  1 
upstream_TC389657        ( 1645) GCTGGGGACCGAACCCAGGG  1 
upstream_TC362258        ( 1944) GCTGGGGACCGAACCCAGGG  1 
upstream_TC363121        ( 1336) GCTGGGGACCGAACCCAGGG  1 
upstream_TC363231        (  524) GCTGGGGACCGAACCCAGGG  1 
upstream_TC386900        ( 1537) GCTGGGGACCGAACCCAGGG  1 
upstream_TC362800        (  707) GCTGGGGACCGAACCCAGGG  1 
upstream_AK018172        (  880) GTTGGAGATTTGGCTCAGTG  1 
upstream_TC402123        (  254) GCTGGGGAGATGGCTCAGTG  1 
upstream_AK012953        (  165) GCTGGGAATTGAACTCAGGA  1 
upstream_TC400611        ( 1873) GCTGGGAATTGAACTCAGGA  1 
upstream_XM_125538       ( 1151) GTTGGGGATTAAGCTCAGTG  1 
upstream_TC388210        (  193) GCTGGGAATGGAACTCAGGA  1 
upstream_TC386012        (  983) GCTGGGGGTGTGGCTCAGTG  1 
upstream_AK012411        ( 1443) GCTGGGAATGGAACTCAGGT  1 
upstream_TC360720        ( 1322) GCTGGGAATTGAACTCAGGC  1 
upstream_AK004829        (   97) GCTGGAGGTGTAGCTCAGTG  1 
upstream_AK049692        (  846) GCTGGAGAGATGGCTCAGTG  1 
upstream_AK029481        (  913) GCTGGGATTTGAACTCAGGA  1 
upstream_TC370838        ( 1706) GCTGGAGAGATGGCTCAGTG  1 
upstream_AK017650        (  132) GCTGGGGTCTGGACTCAGGA  1 
upstream_AK082317|NP5714 (  819) GCTGAGGACCGAACCCAGGG  1 
upstream_AK014223        (  520) GCTGGTGATTGAACCCAGGA  1 
upstream_TC364351        (  121) GCTGAGGAGATGGCTCAGTG  1 
upstream_TC360061        ( 1292) ATTGGGAATTGAACTCAGGA  1 
upstream_TC365315        ( 1002) GCTGGAGAGATGGCTCAGCG  1 
upstream_XM_127811       (  713) GCTGGGAACTGAGCTTAGGT  1 
upstream_AK089911        (  483) GCTGGGGACCCAACCCAGGT  1 
upstream_AK078148        ( 1679) GCTGGGAATTGAACTCAAGT  1 
upstream_NM_030677|NP415 (  600) GCTGGGATTTGAGCTGAGGA  1 
upstream_TC369651        ( 1004) ACTGGGGAGGTGGCTCCGTG  1 
upstream_TC388416        ( 1100) GCTGGGATTTGAACTCGGGA  1 
upstream_BC013628|NP3923 ( 1715) GTTGGGATGTGGGCTCAGCA  1 
upstream_AK004716        ( 1366) GCTAGGGATGTAGCTTAGTT  1 
upstream_TC387299        (  880) GTTAGAGAGCTAGCTCAGAG  1 
upstream_TC361311        ( 1350) GCGGGGGTTGGGACTCCGGG  1 
upstream_BC032191        (  879) GCTGCTGAGGGGGCTCAGTG  1 
upstream_AK079120        ( 1967) GCTGGGGATGGAATCCAGAA  1 
upstream_TC393047        (  791) AATGGGGTTGGAACCCAGGG  1 
upstream_AK036188        ( 1253) ATGGGAGAGATAGCTCAGTG  1 
upstream_TC365773        ( 1143) GCTGGGATCCTAGCCCAGCC  1 
upstream_TC392868        ( 1600) GTTGGATAGATGGCTCAGTA  1 
upstream_AK029065        (  922) GCTCAGGTGGTAGCCCAGGG  1 
upstream_AK053076        (  499) GCTAGAGGCTGGGCTTAGGG  1 
//

Motif 3 position-specific scoring matrix

log-odds matrix: alength= 4 w= 20 n= 397046 bayes= 14.2484 E= 1.6e-192 
  -218  -1277    202  -1277 
  -418    139  -1277     42 
 -1277  -1277   -244    184 
  -260   -407    202  -1277 
  -260   -407    202  -1277 
  -102  -1277    185   -322 
   -38  -1277    175   -422 
   167  -1277   -244   -105 
 -1277      2    -44    113 
  -138    -16    -33     90 
  -418   -407     93     98 
   149  -1277     22  -1277 
    57  -1277    140  -1277 
 -1277    204  -1277   -422 
 -1277     10  -1277    148 
 -1277    197   -403   -264 
   188   -307   -403  -1277 
  -418  -1277    208  -1277 
  -318   -207     93     82 
   -60   -307    164   -190

Motif 3 position-specific probability matrix

letter-probability matrix: alength= 4 w= 20 n= 397046 E= 1.6e-192 
 0.057172  0.000034  0.942756  0.000038 
 0.014321  0.628516  0.000033  0.357130 
 0.000037  0.000034  0.042884  0.957044 
 0.042888  0.014318  0.942756  0.000038 
 0.042888  0.014318  0.942756  0.000038 
 0.128590  0.000034  0.842770  0.028605 
 0.200009  0.000034  0.785635  0.014322 
 0.828490  0.000034  0.042884  0.128591 
 0.000037  0.242857  0.171437  0.585669 
 0.100023  0.214289  0.185721  0.499967 
 0.014321  0.014318  0.442827  0.528534 
 0.728504  0.000034  0.271423  0.000038 
 0.385696  0.000034  0.614231  0.000038 
 0.000037  0.985608  0.000033  0.014322 
 0.000037  0.257140  0.000033  0.742789 
 0.000037  0.942757  0.014317  0.042889 
 0.957043  0.028602  0.014317  0.000038 
 0.014321  0.000034  0.985607  0.000038 
 0.028604  0.057169  0.442827  0.471399 
 0.171441  0.028602  0.728501  0.071457






Time 95821.69 secs.

P N
MOTIF 4 width = 20 sites = 130 llr = 1640 E-value = 2.3e-161

NAME	START	P-VALUE				SITES
			Simplified	A	:	:	1	5	1	:	:	4	2	2	:	:	:	:	:	8	1	:	1	1
			pos.-specific	C	a	1	2	:	1	5	5	5	2	4	2	8	7	a	9	1	2	9	5	8
			probability	G	:	:	7	3	7	:	:	:	2	3	:	1	:	:	:	:	6	:	:	:
			matrix	T	:	9	1	2	1	4	5	1	4	1	7	1	3	:	1	1	1	1	4	1
.
			bits	2.1
				1.9
				1.7
				1.5
			Information	1.3
			content	1.1
			(18.2 bits)	0.8
				0.6
				0.4
				0.2
				0.0
.
			Multilevel		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`C`	`T`	`C`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`C`	`C`
			consensus				`C`	`G`		`T`	`T`	`A`	`G`	`G`	`C`		`T`						`T`
			sequence										`C`	`A`

.

upstream_BC038266	232	7.10e-11	`CTCTTAACAT`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`T`	`C`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`CAAGAGTGAG`
upstream_AK004658	722	7.10e-11	`GCTTTAACCA`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`T`	`C`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`TTTTCTTTCG`
upstream_NM_030677\|NP415	651	7.10e-11	`CTCTTAACCG`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`T`	`C`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`TAGTATCAAG`
upstream_AK029481	968	7.10e-11	`CTCTTAACTG`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`T`	`C`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`CTGAACTGCT`
upstream_TC360061	1416	7.10e-11	`CTCTTAACCT`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`T`	`C`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`ACAATGACCT`
upstream_TC384367	502	7.10e-11	`CTCTTAAGGT`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`T`	`C`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`CAAATAAAAA`
upstream_TC400611	1924	7.10e-11	`CTCTTAACCG`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`T`	`C`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`CTCCCCCCAG`
upstream_TC365071	1128	7.10e-11	`CTCTTAACCA`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`T`	`C`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`CCCCCCCATC`
upstream_TC393047	245	7.10e-11	`GGAGCTGACA`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`T`	`C`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`CCCAGAGCAG`
upstream_TC362800	1664	7.10e-11	`CTCTTAACCA`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`T`	`C`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`CAGGAACGTC`
upstream_AK028989	519	2.32e-10	`CGTTCTACCA`		`C`	`T`	`G`	`A`	`G`	`C`	`T`	`A`	`A`	`A`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`CCCTGGAATT`
upstream_TC363121	1386	2.32e-10	`CGCTCTACCA`		`C`	`T`	`G`	`A`	`G`	`C`	`T`	`A`	`A`	`A`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`TTTTTTTTTT`
upstream_TC390617	252	4.29e-10	`GCGCAAGGTC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`A`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`CGAAAAATAA`
upstream_AK077679	1064	5.26e-10	`GCGCAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`G`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CAAAAAAAAA`
upstream_AK003088	658	5.26e-10	`GCGCAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`G`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CGAAAAAAAA`
upstream_AK080224	953	5.26e-10	`GTGCAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`G`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CGAAAAAAAA`
upstream_XM_130324	458	5.26e-10	`GCGCAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`G`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CGAAAAAAAA`
upstream_AK028897	1717	5.26e-10	`GCGCAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`G`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CGAAAAAAAA`
upstream_XM_125538	1201	5.26e-10	`GCTCAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`G`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CGAAAAAAAG`
upstream_BC046540	645	5.26e-10	`GCGCAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`G`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CAAAAAAAAG`
upstream_AK009867	423	5.26e-10	`GCGCAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`G`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CGGAAAAAAA`
upstream_NM_032398\|NP377	1002	5.26e-10	`GCGCAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`G`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CGAAAAAAAG`
upstream_NM_022879\|NP377	559	5.26e-10	`GCGCAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`G`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`TGAAAAAAAA`
upstream_AW144421	1221	5.26e-10	`GCACAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`G`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CGAAAAAAAG`
upstream_TC365371	674	5.26e-10	`GTGTAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`G`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CGGGGAAAAA`
upstream_AK007972	183	9.36e-10	`GCGCAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`G`	`A`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CGGAAAAAAA`
upstream_AK002297	1450	9.36e-10	`GCGCAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`G`	`A`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CGAAAAAAAA`
upstream_TC388416	1151	9.36e-10	`CCCTTAACAT`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`T`	`T`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`TGAACTTAAT`
upstream_AK002559	188	1.13e-09	`GCGCAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`A`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`TGGAAAAAAA`
upstream_AK018172	930	1.13e-09	`GCGCAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`A`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CGGAAAAAAA`
upstream_NM_146129	690	2.32e-09	`CTCTTAAGCA`		`C`	`T`	`G`	`A`	`A`	`C`	`C`	`A`	`T`	`C`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`ACTAATCCCC`
upstream_AK042260	701	4.56e-09	`CGCTCTACCA`		`C`	`T`	`G`	`A`	`G`	`C`	`T`	`A`	`A`	`A`	`T`	`C`	`C`	`C`	`C`	`A`	`A`	`C`	`C`	`C`	`CAATCAACAT`
upstream_AF162853\|NP0449	433	4.56e-09	`CACTCTACCA`		`C`	`T`	`G`	`A`	`G`	`C`	`T`	`A`	`A`	`A`	`T`	`C`	`C`	`C`	`C`	`A`	`A`	`C`	`C`	`C`	`CTTCTTTTCT`
upstream_AK017650	169	4.56e-09	`AAGAAAAGCC`		`C`	`T`	`G`	`A`	`A`	`C`	`C`	`A`	`C`	`C`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`TCTTTCTACT`
upstream_TC389657	1695	4.56e-09	`CGCTCTACCA`		`C`	`T`	`G`	`A`	`G`	`C`	`T`	`A`	`A`	`A`	`T`	`C`	`C`	`C`	`C`	`A`	`A`	`C`	`C`	`C`	`CAACTCCTTC`
upstream_TC386900	1576	4.56e-09	`CGCTCTACCA`		`C`	`T`	`G`	`A`	`G`	`C`	`T`	`A`	`A`	`A`	`T`	`C`	`C`	`C`	`C`	`A`	`A`	`C`	`C`	`C`	`CGTCTTCTGA`
upstream_AK012953	217	5.36e-09	`CTCTTAACCG`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`T`	`C`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`T`	`C`	`C`	`AGAATCCAAC`
upstream_TC367674	1361	7.36e-09	`CTTTTAGCCG`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`T`	`G`	`C`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`TATCAGGAAC`
upstream_TC386012	330	8.58e-09	`CTCTACTTAT`		`C`	`T`	`A`	`A`	`G`	`C`	`C`	`A`	`C`	`A`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`TAAGTATGAG`
upstream_AK036394	1166	1.56e-08	`GCACAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`T`	`G`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CGAAAAAAAG`
upstream_TC363231	574	1.56e-08	`CGCTCTACCA`		`C`	`T`	`G`	`A`	`G`	`C`	`T`	`A`	`A`	`A`	`T`	`C`	`T`	`C`	`C`	`A`	`A`	`C`	`C`	`C`	`CCAGCCTTAC`
upstream_NM_026362	792	2.39e-08	`CATTTACCCA`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`C`	`C`	`T`	`C`	`A`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`CCATACTGTA`
upstream_TC402123	1521	2.74e-08	`GTAGGCTTCT`		`C`	`T`	`C`	`A`	`A`	`C`	`C`	`C`	`T`	`C`	`T`	`C`	`C`	`C`	`C`	`A`	`C`	`C`	`T`	`C`	`TCCATCCTCT`
upstream_AF216832\|NP2286	660	3.15e-08	`ACTCTACCAA`		`T`	`T`	`G`	`A`	`G`	`C`	`T`	`A`	`C`	`A`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`C`	`C`	`CACAGCATTG`
upstream_AK076663	543	4.70e-08	`ACTTCACTGA`		`C`	`T`	`G`	`A`	`G`	`C`	`T`	`A`	`T`	`G`	`T`	`C`	`C`	`C`	`T`	`A`	`G`	`C`	`C`	`A`	`TCGCTCTGTG`
upstream_TC366567	1282	6.11e-08	`GCACAAGGCC`		`C`	`T`	`G`	`G`	`G`	`T`	`T`	`C`	`G`	`G`	`G`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CGAAAAAAAG`
upstream_TC384482	1457	6.11e-08	`CTCTTAACCA`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`T`	`C`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`G`	`C`	`AACCAATGAC`
upstream_AK049373	766	8.94e-08	`ATGTGGAACT`		`C`	`T`	`C`	`A`	`G`	`C`	`T`	`C`	`C`	`T`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`A`	`C`	`CATGTCTGCG`
upstream_TC376396	1437	1.01e-07	`TTTCTAAGCC`		`C`	`T`	`G`	`A`	`T`	`C`	`T`	`A`	`C`	`A`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`T`	`C`	`C`	`TCCCTGAGGT`
upstream_TC388210	244	1.01e-07	`CCCTTAACCA`		`T`	`T`	`G`	`A`	`G`	`T`	`C`	`A`	`T`	`G`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CAAGGCCTGC`
upstream_AK082317\|NP5714	705	1.29e-07	`CCCCCAGCCA`		`C`	`C`	`G`	`A`	`G`	`C`	`C`	`A`	`C`	`A`	`C`	`C`	`C`	`C`	`C`	`A`	`A`	`C`	`C`	`C`	`ACCGAGCCAC`
upstream_AK079120	362	1.46e-07	`TCGAAGGGTC`		`C`	`T`	`G`	`G`	`G`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`C`	`C`	`C`	`T`	`C`	`C`	`C`	`A`	`GGAACTTCCA`
upstream_NM_009366\|NP381	1820	1.64e-07	`GCCCAACCCC`		`C`	`T`	`C`	`T`	`G`	`T`	`C`	`C`	`C`	`C`	`T`	`C`	`C`	`C`	`C`	`T`	`C`	`C`	`C`	`C`	`GCCGCCGCGG`
upstream_AK089911	1254	2.33e-07	`GCAGCCACTG`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`C`	`C`	`C`	`C`	`T`	`C`	`C`	`A`	`G`	`G`	`C`	`C`	`TGACTCTATT`
upstream_TC392868	1650	3.66e-07	`TGCTGGGGAT`		`C`	`T`	`G`	`A`	`G`	`T`	`T`	`C`	`T`	`G`	`T`	`T`	`C`	`C`	`T`	`A`	`G`	`C`	`A`	`C`	`TCACGTCAGA`
upstream_TC373575	105	3.66e-07	`TCACTCCTAG`		`C`	`T`	`C`	`T`	`G`	`C`	`T`	`C`	`T`	`G`	`C`	`C`	`T`	`C`	`C`	`A`	`A`	`C`	`T`	`C`	`GATGTAATTG`
upstream_NM_028715	767	4.55e-07	`GACCTCAGCT`		`C`	`T`	`A`	`G`	`C`	`C`	`T`	`A`	`G`	`C`	`T`	`C`	`C`	`C`	`C`	`T`	`G`	`C`	`C`	`C`	`CCCTGTTTCT`
upstream_TC359509	619	4.55e-07	`CCAGACAGCC`		`C`	`T`	`C`	`T`	`C`	`C`	`C`	`T`	`G`	`C`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`GTCCCTAGTT`
upstream_TC363796	383	5.07e-07	`GGCCCTACCT`		`C`	`T`	`A`	`A`	`G`	`C`	`C`	`A`	`T`	`T`	`T`	`C`	`T`	`C`	`C`	`A`	`G`	`T`	`C`	`C`	`TGAAGGAGAA`
upstream_TC385863	1225	5.64e-07	`CTCCCCAGAT`		`C`	`C`	`C`	`A`	`A`	`C`	`C`	`C`	`A`	`C`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`A`	`C`	`CAGCAGCCAC`
upstream_TC386307	1146	6.27e-07	`CTAATCAGTG`		`C`	`T`	`G`	`T`	`T`	`T`	`C`	`C`	`T`	`C`	`T`	`C`	`C`	`T`	`C`	`A`	`G`	`C`	`T`	`C`	`CATTTCTCAA`
upstream_BC026545\|NP5232	1786	7.73e-07	`TGCTCCAACA`		`C`	`T`	`A`	`A`	`G`	`C`	`T`	`A`	`T`	`A`	`T`	`T`	`C`	`C`	`C`	`A`	`G`	`C`	`C`	`A`	`CTGTCCAATG`
upstream_AK078148	1725	7.73e-07	`CTATTCACCA`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`T`	`C`	`C`	`T`	`T`	`C`	`C`	`C`	`A`	`C`	`C`	`C`	`GCTTAGGGAA`
upstream_BC005477	1148	8.57e-07	`CTCTTAACCT`		`C`	`T`	`G`	`A`	`G`	`C`	`C`	`A`	`T`	`C`	`T`	`C`	`T`	`C`	`T`	`A`	`T`	`C`	`C`	`A`	`CCCACCCACC`
upstream_BC032191	1235	8.57e-07	`GCACCCAGTC`		`C`	`T`	`G`	`A`	`C`	`T`	`T`	`C`	`C`	`A`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`A`	`T`	`CCCGTAACTC`
upstream_AK049692	897	8.57e-07	`TCCAGAGGTC`		`C`	`T`	`G`	`A`	`G`	`T`	`T`	`C`	`A`	`A`	`T`	`T`	`C`	`C`	`C`	`A`	`G`	`C`	`A`	`A`	`CCACATGGTG`
upstream_BC004084	965	1.41e-06	`CCTTCAACTC`		`C`	`T`	`C`	`A`	`G`	`T`	`C`	`C`	`T`	`T`	`C`	`C`	`C`	`C`	`T`	`A`	`A`	`C`	`T`	`C`	`TTCCATAGGT`
upstream_AK012411	1494	1.41e-06	`CTCTTAAGCA`		`C`	`C`	`G`	`A`	`G`	`C`	`C`	`A`	`A`	`C`	`T`	`C`	`T`	`C`	`T`	`A`	`G`	`T`	`C`	`C`	`CCACCCCAAT`
upstream_M76601\|NP059476	611	1.56e-06	`TTCCTGTCTC`		`C`	`T`	`G`	`G`	`A`	`T`	`C`	`C`	`T`	`T`	`T`	`G`	`C`	`C`	`C`	`A`	`C`	`C`	`T`	`C`	`ATCCCCAGAG`
upstream_M55617\|NP057457	1709	1.72e-06	`TCCATGATCC`		`C`	`T`	`G`	`A`	`T`	`C`	`A`	`A`	`G`	`G`	`T`	`C`	`C`	`C`	`C`	`C`	`C`	`C`	`C`	`C`	`GCCCCTTTGT`
upstream_XM_127811	763	1.89e-06	`TTCTTAACAG`		`C`	`T`	`C`	`A`	`G`	`C`	`C`	`A`	`A`	`T`	`T`	`T`	`T`	`C`	`C`	`A`	`G`	`T`	`C`	`C`	`CATAAAAAGG`
upstream_NM_173071\|NP589	434	1.89e-06	`TACCGGAGCT`		`C`	`T`	`A`	`A`	`T`	`T`	`T`	`C`	`T`	`A`	`T`	`C`	`T`	`C`	`C`	`T`	`G`	`C`	`T`	`C`	`CTGGAACTAT`
upstream_NM_016695\|NP378	1713	2.28e-06	`TCCCATCAGG`		`C`	`T`	`C`	`A`	`G`	`T`	`C`	`C`	`C`	`C`	`C`	`C`	`C`	`C`	`C`	`C`	`C`	`T`	`T`	`C`	`TTTTATTAAA`
upstream_TC385849	488	2.28e-06	`GCGCAAGGCC`		`T`	`G`	`G`	`G`	`G`	`T`	`T`	`C`	`G`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CAAAAAAAAG`
upstream_TC363599	506	2.51e-06	`GCCCAGGCCC`		`C`	`G`	`G`	`G`	`G`	`T`	`T`	`G`	`G`	`G`	`T`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CAAAAAAAAA`
upstream_BC013628\|NP3923	1265	2.75e-06	`TCTGCCAACT`		`C`	`T`	`G`	`A`	`C`	`C`	`T`	`C`	`T`	`G`	`C`	`T`	`C`	`T`	`C`	`A`	`G`	`C`	`T`	`C`	`AGGCCCACTG`
upstream_AK031801	975	2.75e-06	`TCCTGGCGCT`		`C`	`T`	`C`	`A`	`T`	`T`	`T`	`C`	`T`	`C`	`T`	`T`	`C`	`C`	`C`	`T`	`A`	`C`	`C`	`C`	`ACCCACCGAC`
upstream_TC361950	1292	3.02e-06	`TTCTCTGTCT`		`C`	`T`	`C`	`T`	`G`	`T`	`C`	`T`	`G`	`C`	`C`	`C`	`C`	`C`	`C`	`C`	`C`	`C`	`C`	`C`	`CCCCCGTGTG`
upstream_AK052368	1556	3.30e-06	`CCACATTTCT`		`C`	`T`	`G`	`T`	`T`	`T`	`T`	`T`	`C`	`C`	`T`	`C`	`C`	`C`	`C`	`C`	`C`	`C`	`C`	`C`	`CTCTTTCCCG`
upstream_TC369651	17	3.30e-06	`CAGTTTCCAT`		`C`	`C`	`T`	`C`	`G`	`T`	`C`	`C`	`T`	`C`	`C`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`T`	`C`	`CAGGTCCCCG`
upstream_AK028295	291	3.61e-06	`TCCTGCCCCC`		`C`	`T`	`G`	`T`	`G`	`C`	`C`	`C`	`A`	`C`	`T`	`C`	`C`	`C`	`C`	`C`	`A`	`G`	`C`	`C`	`ATTTCCCATC`
upstream_XM_132762	1352	3.95e-06	`CTCCTAGAGC`		`C`	`T`	`G`	`G`	`G`	`C`	`C`	`A`	`G`	`T`	`T`	`C`	`T`	`C`	`T`	`C`	`T`	`C`	`C`	`C`	`TTCCCAGCCA`
upstream_AK005423	1909	3.95e-06	`TCTGTTTCCT`		`C`	`T`	`G`	`G`	`T`	`G`	`C`	`C`	`C`	`C`	`T`	`C`	`C`	`C`	`C`	`C`	`A`	`C`	`C`	`C`	`CAGGCACCAA`
upstream_TC370838	1757	3.95e-06	`CCCAGAGGTC`		`C`	`T`	`G`	`A`	`G`	`T`	`T`	`C`	`A`	`A`	`T`	`T`	`C`	`C`	`C`	`A`	`A`	`C`	`A`	`A`	`CCACATGGTG`
upstream_TC409352	1413	4.32e-06	`AATTGCCTTG`		`C`	`T`	`G`	`A`	`G`	`T`	`T`	`A`	`C`	`T`	`T`	`T`	`C`	`T`	`C`	`T`	`G`	`C`	`C`	`C`	`ATGCGTCTTT`
upstream_TC360064	1768	4.32e-06	`ACATGGTAGT`		`C`	`T`	`G`	`T`	`A`	`C`	`C`	`C`	`C`	`G`	`T`	`C`	`C`	`C`	`C`	`C`	`G`	`C`	`A`	`A`	`CTGTGGCTTT`
upstream_AK014223	1859	4.72e-06	`GCACTCCTGC`		`C`	`T`	`C`	`A`	`G`	`G`	`T`	`C`	`C`	`C`	`G`	`C`	`C`	`C`	`C`	`T`	`G`	`C`	`C`	`C`	`CGCGCACGCG`
upstream_AK043837	1881	4.72e-06	`GGCAGCCTTC`		`C`	`T`	`A`	`A`	`C`	`C`	`C`	`C`	`G`	`C`	`C`	`T`	`C`	`C`	`C`	`A`	`T`	`C`	`C`	`C`	`ACCTACACTG`
upstream_AK012647	301	5.14e-06	`TCCTTCTCCC`		`C`	`C`	`C`	`A`	`T`	`T`	`C`	`C`	`C`	`C`	`T`	`C`	`C`	`C`	`C`	`T`	`T`	`C`	`C`	`C`	`TCCGCGTGCT`
upstream_TC386743	106	5.14e-06

P N MOTIF 1 width = 20 sites = 117 llr = 1781 E-value = 4.7e-265

P N MOTIF 2 width = 20 sites = 144 llr = 1865 E-value = 1.8e-211

P N MOTIF 3 width = 20 sites = 70 llr = 1227 E-value = 1.6e-192

P N MOTIF 4 width = 20 sites = 130 llr = 1640 E-value = 2.3e-161

P N
MOTIF 1 width = 20 sites = 117 llr = 1781 E-value = 4.7e-265

P N
MOTIF 2 width = 20 sites = 144 llr = 1865 E-value = 1.8e-211

P N
MOTIF 3 width = 20 sites = 70 llr = 1227 E-value = 1.6e-192

P N
MOTIF 4 width = 20 sites = 130 llr = 1640 E-value = 2.3e-161